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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g16250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 519aa MW: 59593.9 Da PI: 6.0585 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.9 | 2.8e-28 | 115 | 200 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++ ++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea Vradi08g16250.1 115 RWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 200 8*************************************7778*****************************8..55667*******85 PP | |||||||
2 | trihelix | 46 | 1.3e-14 | 430 | 498 | 1 | 68 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 rWt+ e+ Li++r+ e+r+r+ g l+ +lW+e+s+k+ gf rs +Ck+ w++++ +++ + Vradi08g16250.1 430 RWTEMEISNLIQLRSGFEQRFREnGYLENGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDEC 498 8*********************8568********************************99999887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.5 | 112 | 175 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.888 | 114 | 173 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.30E-20 | 114 | 180 | No hit | No description |
Pfam | PF13837 | 2.6E-19 | 114 | 201 | No hit | No description |
PROSITE profile | PS50090 | 6.853 | 423 | 488 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.18 | 427 | 490 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.38E-14 | 429 | 494 | No hit | No description |
Pfam | PF13837 | 7.2E-9 | 429 | 501 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MGDPYGLPED LRRFIPPRTH MNPSSTHLLE PLCLHHGLSP VAAATTIPPN TYDHNMVGDV 60 FFPRAFTHFS HHHDYSSSSG VNPTNAATAA VSDHAFCSME SAEKGWFGFD SGNNRWPRQE 120 TLSLLEIRSR LDCKFRENNQ KAPLWNEISR IMAEEFGYQR SGKKCKEKFE NLYKYYKKTK 180 EGKASRQDGK HYRFFRQLEA ICGDQANTNH ASTSDKTHRA GANNGNIQTP TFAINQEHNG 240 DSSNNPKCSE SISISNSSEF ETSSSENNEE DLSAIAFMMR QSREKQKALL DERQSDHRRL 300 RKSWRAKVEE IVDSHMRKII ETQDAWMERM LSVVEQREQE MSSKEEERKR KESMWFDQQV 360 HEXWAKEKAW VEARDAALIE VVRKHVGIEL EALPLDEAMV EEAGNKNKGE GKIESSEFPS 420 EGVDQRSSSR WTEMEISNLI QLRSGFEQRF RENGYLENGL WDEISAKLGC LGFDRSGSEC 480 KQIWDEISIS LRRTVDECDG GKRRPWYLGL RVTDDDDL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g16250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512554.1 | 0.0 | trihelix transcription factor PTL | ||||
TrEMBL | A0A1S3V329 | 0.0 | A0A1S3V329_VIGRR; trihelix transcription factor PTL | ||||
STRING | XP_007143826.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 3e-77 | Trihelix family protein |