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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g15900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 317aa MW: 34573.4 Da PI: 6.9443 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.5e-34 | 39 | 93 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl Vradi08g15900.1 39 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-32 | 36 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.726 | 36 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-16 | 39 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-24 | 39 | 94 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-8 | 41 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.7E-13 | 167 | 212 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MFSRLIHPHE GGVGQEDMQG ASNHAHLGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG 60 GASKATPKAI MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDEGCKDGSK SYSSNNVYII 120 SFCIGLNLLS FIEKPMQGMS GSYLQESPGT DNSSPKLPTS DANEGHEVKE ALRAQMEVQS 180 KLHLLVEAEK HLQIRQDAER RYMGMLERAC KMLADQFIGD IIMDTDGQKF QGLESKTPRS 240 SLVDHVGFFP PVCSEVGGMH VSEVPPILQP QGADCSTESC LTSLESLGGL TLEGSPGGSK 300 KRMLSLDSMT IAKGWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g15900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511135.1 | 0.0 | protein PHR1-LIKE 2 isoform X3 | ||||
Refseq | XP_017437288.1 | 0.0 | PREDICTED: protein PHR1-LIKE 2-like isoform X1 | ||||
TrEMBL | A0A1S3UYJ4 | 0.0 | A0A1S3UYJ4_VIGRR; protein PHR1-LIKE 2 isoform X3 | ||||
STRING | XP_007144235.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 4e-62 | G2-like family protein |