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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g13880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 440aa MW: 48444.3 Da PI: 8.3499 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 83 | 109 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Vradi08g13880.1 83 PGEPDCSYYIRTGLCRFGATCRFNHPP 109 5789*********************97 PP | |||||||
2 | zf-CCCH | 38 | 2.8e-12 | 158 | 181 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Vradi08g13880.1 158 PECTYYLRTGQCKFGNTCKFHHPQ 181 79********************97 PP | |||||||
3 | zf-CCCH | 38 | 2.7e-12 | 316 | 341 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+++tG Ck+G+ C+F+H+ Vradi08g13880.1 316 PGQPECQFYMKTGDCKFGAVCRFHHP 341 5789*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 84 | 109 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 87 | 110 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 88 | 108 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 154 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 154 | 181 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-10 | 158 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 160 | 180 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.436 | 315 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.4E-6 | 315 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-9 | 317 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 319 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 321 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEKKKLNVII PNPQPHGIIP RRNSPISQGQ GLVFVAIVCI DDVASVSLTS CCSRVYDVVS 60 DSLWMMNLRS GETMDSGAYP ERPGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIATARM 120 IGEFPERIGQ PECQAHQAGI AGRVALNTLG YPLRPNDPEC TYYLRTGQCK FGNTCKFHHP 180 QPSNMMLSLQ DSSVYPTVHS PTTPGQQSYA GGITNWSRAP YIPSPRWQVP SSYAPLILPQ 240 GVVSVPGWSA YGGQVGSIST SDSHQQAMRN GQTYGTSRQG ELANAGSHGA YSQFRSGTVP 300 VGFYALQREN IFPERPGQPE CQFYMKTGDC KFGAVCRFHH PSERLIPAPD CVLSPMGLPL 360 RPFGLAVSIV LERADTRQCP ICYRENLCVS SIHVMAYANL AQVASLTTQW EFSPIISLHR 420 LQLMPRAGIC YDLHQELLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g13880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-175 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022640978.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A3Q0FAY2 | 0.0 | A0A3Q0FAY2_VIGRR; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_007143976.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-124 | zinc finger protein 1 |