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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g13180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 591aa MW: 67750.5 Da PI: 7.4994 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.8 | 9.1e-16 | 101 | 175 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++evl L+++r++me+++ + We+vs+k++e g++rs+++Ckek+e+ ++++ + + k++ ++++++++le Vradi08g13180.1 101 WTNDEVLSLLRIRSSMESWFPEL-----TWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNN-----NNYRFLSELE 175 ********************987.....9*******************************8765555542.....3566666665 PP | |||||||
2 | trihelix | 93.6 | 1.9e-29 | 429 | 518 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr.emeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+evlaLi++r ++ +++++++ k plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Vradi08g13180.1 429 RWPKDEVLALINLRCsSVSNNSSSNEekegNKVPLWERISQGMSELGYRRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 518 8************96334444443223455999******************************************8.9999********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.2E-11 | 100 | 177 | No hit | No description |
PROSITE profile | PS50090 | 6.365 | 100 | 152 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.9E-19 | 428 | 519 | No hit | No description |
CDD | cd12203 | 3.88E-22 | 428 | 498 | No hit | No description |
PROSITE profile | PS50090 | 6.272 | 429 | 491 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MFDGVPEQFH QFITPRTSLP LHLPFPLHAS ANPNTTFPSN FDPYNPHHHQ LPLQPTTLLH 60 PLHHPPHPTH KDEQHKEQNT AVALPMNFQI QRDQRHLIHP WTNDEVLSLL RIRSSMESWF 120 PELTWEHVSR KLAELGYKRS AEKCKEKFEE ESRYFNNNIN YGKNNNNYRF LSELEQLYHQ 180 GGADHLATQE KTHQLHKQDK MDHHPLEEGD SGKLDPPLTK QNHDAAAVEK NQGRKRKRPG 240 RFEMFKGFCE SIVHKMMAQQ EEMHNKLLED MMKRDEEKFT REEAWKKQEM EKMNKELEMM 300 AREQAIAGDR QTNIIQILNK FSVTPASNKS LKVVTNGSNL KSHISQNPNP SQNIPATPAT 360 ENPTSSVAQD TLQLITNPST SSSSAQVPQP NPSSSSLNSQ NNINPIERNS VLNKSLSSNV 420 GEKDDVGRRW PKDEVLALIN LRCSSVSNNS SSNEEKEGNK VPLWERISQG MSELGYRRSA 480 KRCKEKWENI NKYFRKTKDV NKKRSLDSRT CPYFHQLSSL YNEGKLVLQS ERPESHTDNQ 540 AENLEQVQAD QTRAESSSQV GSGGFSVQQQ VDHGGEKTLM QVPSLDFDQF * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g13180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514854.1 | 0.0 | trihelix transcription factor GTL2 | ||||
TrEMBL | A0A1S3V9N5 | 0.0 | A0A1S3V9N5_VIGRR; trihelix transcription factor GTL2 | ||||
STRING | XP_007144820.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 3e-39 | Trihelix family protein |