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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g11220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 320aa MW: 35916.7 Da PI: 7.5924 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 36.5 | 1e-11 | 61 | 84 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtp+LH rFv+av++LGG+e Vradi08g11220.1 61 PRLRWTPDLHLRFVHAVQRLGGQE 84 8*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-14 | 57 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-7 | 60 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-10 | 61 | 102 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGESRVSQCS KTSPSNIDEE ECESHANEDQ RKQNNNGGSS SNSTVEESEK KIRPYVRSKL 60 PRLRWTPDLH LRFVHAVQRL GGQESLSIAH VKSHLQMFRS KKVDDRNQVF SDHTSLVEIG 120 DKNIYNLSQL SMLQGYNPSQ SSSYSYTNNN YPSYGFGDAS FGSYEKLVHR PLDWFNGMSR 180 AGSSICGEQS TSKTREPKYE LFSFGAYENL STRLSHVEHT PSNIIQQRAQ NLMPVNPTTE 240 LKRLKRKAQD SSLDLDLSLK LNTKMDGEGT KLEDNEVDSN LSLSLCSQSS SSNLSSRLKE 300 AKDRCEENGK RASTLDLTI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g11220.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512943.1 | 0.0 | two-component response regulator ARR18 | ||||
TrEMBL | A0A1S3V3L9 | 0.0 | A0A1S3V3L9_VIGRR; two-component response regulator ARR18 | ||||
STRING | XP_007134813.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-37 | G2-like family protein |