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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g06550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 498aa MW: 58138.4 Da PI: 6.6056 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.2 | 1.1e-28 | 34 | 118 | 2 | 87 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 W++qe+l+L+e+r++++ ++++++ k+plW+e+s+ m +e+g++rs k+C+ek+enl k+ykk+k+g+ +r+ + +++++f+qlea Vradi08g06550.1 34 WPRQETLTLLEIRSRLDPKFKEANHKGPLWDEISRIMsEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRH--DGKHYRFFRQLEA 118 *************************************999*****************************985..5557*******85 PP | |||||||
2 | trihelix | 45.1 | 2.7e-14 | 334 | 417 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 rW+++e L ++r e+e+r+ ++ +++ We v+ km+ g+ers+ +Ckekwe+++++ + + e e+++ +e++++c +f+ Vradi08g06550.1 334 RWPESEMTRLQQLRAEIETRFPCSEiSEEVSWEVVATKMACFGYERSALMCKEKWESMSNYQR-EGEKEGSKkCKENTRNCFFFK 417 8*********************876599******************************98655.555555551578899999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.6 | 30 | 93 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.864 | 34 | 91 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.1E-20 | 34 | 119 | No hit | No description |
CDD | cd12203 | 9.25E-19 | 34 | 98 | No hit | No description |
SMART | SM00717 | 0.27 | 331 | 394 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.3E-9 | 333 | 417 | No hit | No description |
CDD | cd12203 | 6.47E-14 | 334 | 397 | No hit | No description |
PROSITE profile | PS50090 | 6.353 | 334 | 392 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MPPHPTADLF PGHRNLSPLP TPQHQQQHYE VMIWPRQETL TLLEIRSRLD PKFKEANHKG 60 PLWDEISRIM SEEHGYQRSG KKCREKFENL YKYYKKTKDG KAGRHDGKHY RFFRQLEALY 120 GENSSTVSVP ETNVVGSIHF QASSHDPSQT NQDKFQSHNS KHCDSLSLTN STNFDTTSSD 180 DDNDHHSMEN ESIEKRRKRN SGRSWKVKIK DFIDSQMRKL VEKQKEWLDK LVKTLEEKEK 240 ERMLREEEWR KQEANRLERE QKFWAKERAW IEARDAALME ALQKLTGREI MKPETPNDGI 300 NLTGAEVQNH SENQNNEDES EILNSCNVMR GGDRWPESEM TRLQQLRAEI ETRFPCSEIS 360 EEVSWEVVAT KMACFGYERS ALMCKEKWES MSNYQREGEK EGSKKCKENT RNCFFFKNNN 420 DHRQSSLYDQ GSAYCDDISD QGKEIERLQT NNSSSPSKSN AGNVDHSDSC FPFLMSSEGG 480 NLWENYGLKI NKENQNH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g06550.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512744.1 | 0.0 | trihelix transcription factor PTL | ||||
Swissprot | Q9LZS0 | 1e-129 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A1S3V3M1 | 0.0 | A0A1S3V3M1_VIGRR; trihelix transcription factor PTL | ||||
STRING | XP_007145244.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-108 | Trihelix family protein |
Publications ? help Back to Top | |||
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