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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g05970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 342aa MW: 39880.4 Da PI: 10.1953 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 78.6 | 9.3e-25 | 99 | 195 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++ Vradi08g05970.1 99 KWTDTMVRLLIMAVYYIGDEGGSEGtdkkkssgmlQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLE 192 7**************99999986433556788888**********************************************559*******999 PP trihelix 84 qle 86 +e Vradi08g05970.1 193 TME 195 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.4E-22 | 97 | 186 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEPNGLGAGM FSGLVGVENS LPPQQQQNPH HLHNHSQMVP YGSHHDTDPH HQHHNQSIKQ 60 AYPQYSSIKT KQQQQSALSD DDDDTSDPKK KVSMWQRMKW TDTMVRLLIM AVYYIGDEGG 120 SEGTDKKKSS GMLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDILGKGT 180 ACRVVENQSL LETMELSPKM KEEVKKLLNS KHLFFREMSM RKKARKVRGV GVSAVMMQQL 240 NAEVNGVFQD GGRSAWEKKQ WMRNRILQLE EQQLNYQSQS YELEKQRLKW ARFSSKKERE 300 MERAKLENER RRLENERMVL LIRHKELELM SLQQQQQHSS T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g05970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512858.1 | 1e-152 | putative uncharacterized protein DDB_G0287113 | ||||
TrEMBL | A0A151TVB9 | 1e-152 | A0A151TVB9_CAJCA; Uncharacterized protein | ||||
TrEMBL | A0A1S3V3E1 | 1e-151 | A0A1S3V3E1_VIGRR; Uncharacterized protein | ||||
STRING | POPTR_0016s11010.1 | 1e-139 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4820 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 4e-58 | sequence-specific DNA binding transcription factors |