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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g05950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 486aa MW: 53119.7 Da PI: 6.1334 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.4 | 9.1e-19 | 103 | 189 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ ++l+rg+l++ +Weev+ ++ r + ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle Vradi08g05950.1 103 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAFVVseRCENQSKSVEQCKNKVDNLKKRYKLERQRMSSG-CISTSHWPWFKQLE 189 5*************************************666677899*************************9.99999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-19 | 101 | 191 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 6.2E-62 | 230 | 478 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 2.36E-52 | 235 | 478 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 6.38E-110 | 237 | 479 | No hit | No description |
Pfam | PF00696 | 1.7E-19 | 238 | 458 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MASCDDDDDF SLLRDDNHHL HQPYAPHHFS PSTVAVAVAP VPPKSIADDA DDYGNPFDDD 60 GGSEKRKDRE EIGEGATSYG FNKRSKAPQS SAGSAEYRKD REEWSDTAIV CLLEAYTEKF 120 TQLNRGNLRG RDWEEVAFVV SERCENQSKS VEQCKNKVDN LKKRYKLERQ RMSSGCISTS 180 HWPWFKQLEQ IVGNSLPAKF SDEDKAVVSA GTSPRQSKST GQANSIRSKA LTNLRWRRVV 240 FKISGAALTG SDTCNMDPKV AMLVSREVAI ASRLGVEVAI VVGGCNFFSG DAWVNATGLE 300 RCTAYQVGMM ATVMNSILLQ STLEKMGVQT RVQTSIAMQE FAELYNRQRA IRHLEKGRVI 360 IFGGICFGAG NPLFSTDIAA ALRASEPSAY ISFNLAVNAE AVLKGTNVDG VYDCNSRDNN 420 FTFEHISFRE LGSRGITSMD ASALTLCKEN AIPVVVFNLL EPGNISKALC GEQVGTLIDQ 480 TGAVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek5_B | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek5_C | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek5_D | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek5_E | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek5_F | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek6_A | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek6_B | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek6_C | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek6_D | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek6_E | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3ek6_F | 9e-58 | 228 | 478 | 1 | 239 | Uridylate kinase |
3nwy_A | 1e-57 | 207 | 478 | 26 | 279 | Uridylate kinase |
3nwy_B | 1e-57 | 207 | 478 | 26 | 279 | Uridylate kinase |
3nwy_C | 1e-57 | 207 | 478 | 26 | 279 | Uridylate kinase |
3nwy_D | 1e-57 | 207 | 478 | 26 | 279 | Uridylate kinase |
3nwy_E | 1e-57 | 207 | 478 | 26 | 279 | Uridylate kinase |
3nwy_F | 1e-57 | 207 | 478 | 26 | 279 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g05950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027936963.1 | 0.0 | uncharacterized protein LOC114191776 | ||||
TrEMBL | A0A4D6MXW2 | 0.0 | A0A4D6MXW2_VIGUN; Uridylate kinase | ||||
STRING | XP_007145266.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |