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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g05270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 223aa MW: 24396 Da PI: 6.4122 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 44.8 | 2.2e-14 | 70 | 95 | 1 | 26 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkk 26 d+epgrCrRtDGKkWRCsr+++eg++ Vradi08g05270.1 70 DPEPGRCRRTDGKKWRCSREAVEGQN 95 79*********************985 PP | |||||||
2 | QLQ | 54.3 | 4.2e-19 | 4 | 39 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q l+++y++a++PvPp+Llq+i+k Vradi08g05270.1 4 CFSFAQWQELELQTLIFRYMLAGAPVPPQLLQPIKK 39 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.0E-10 | 3 | 39 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.524 | 4 | 39 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.5E-14 | 5 | 37 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 15.565 | 70 | 115 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.4E-11 | 71 | 94 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MESCFSFAQW QELELQTLIF RYMLAGAPVP PQLLQPIKKS FLHSPPPFLL QLYHPPLLES 60 GYYWGREAVD PEPGRCRRTD GKKWRCSREA VEGQNSSGAK SDSKSLSENH DHVDGNGRSD 120 GHVLRHFFDD WPRTLQEQDH GESNGSQNNN TGTYLSMSTQ GITSSDVSLR LSTGHAENTC 180 HVASVGGPLA EALRSSTSTS SPTSVLLQLP TSSACNTSFI ST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g05270.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015746 | 0.0 | AP015746.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0702, complete sequence, cultivar: Shumari. | |||
GenBank | AP016085 | 0.0 | AP016085.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_1041, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512938.1 | 1e-148 | growth-regulating factor 3 | ||||
Swissprot | Q9SJR5 | 1e-34 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | A0A1S3V3L4 | 1e-147 | A0A1S3V3L4_VIGRR; growth-regulating factor 3 | ||||
STRING | GLYMA13G21625.1 | 1e-109 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-36 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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