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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g04700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 220aa MW: 25362.8 Da PI: 10.5947 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 164 | 2e-51 | 92 | 188 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqd+++Pianv rim+k+lPa+akis++aket+qecvse+isf+t+ea+d+cqre+rkt++++d+lwa+++lGf+dy+++l++yl++yr+ e Vradi08g04700.1 92 VREQDQYMPIANVLRIMRKILPAHAKISDEAKETIQECVSEYISFITAEANDRCQREQRKTVTAEDVLWAMGKLGFDDYAQSLSIYLNRYRQSE 185 69******************************************************************************************** PP NF-YB 95 gek 97 g++ Vradi08g04700.1 186 GDR 188 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.5E-47 | 89 | 193 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.02E-35 | 95 | 192 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-24 | 98 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.9E-15 | 126 | 144 | No hit | No description |
PRINTS | PR00615 | 3.9E-15 | 145 | 163 | No hit | No description |
PRINTS | PR00615 | 3.9E-15 | 164 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKSGAVKQGL RSNTTKSWSG RKKAKSWRGQ TSPKVEYDQS WRDQTKAKSR RGQRRPKAKH 60 NQKLERPNKV EDRRVKDKLS HERPNQGAMA GVREQDQYMP IANVLRIMRK ILPAHAKISD 120 EAKETIQECV SEYISFITAE ANDRCQREQR KTVTAEDVLW AMGKLGFDDY AQSLSIYLNR 180 YRQSEGDRMS VRRAPTCVPP MEMNPPYQPY PPHVRDSVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-54 | 87 | 183 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g04700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511494.1 | 5e-90 | nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A1S3V021 | 1e-88 | A0A1S3V021_VIGRR; nuclear transcription factor Y subunit B-9-like | ||||
STRING | XP_007145389.1 | 1e-77 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-57 | nuclear factor Y, subunit B6 |