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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g03300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 248aa MW: 28176.6 Da PI: 4.8616 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 57.4 | 3.1e-18 | 34 | 71 | 1 | 39 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk 39 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+ Vradi08g03300.1 34 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVD 71 59*******************.***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.78E-9 | 31 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-16 | 33 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-12 | 35 | 72 | IPR006447 | Myb domain, plants |
SuperFamily | SSF54001 | 1.69E-9 | 132 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MYFISFDITN SSHHQFPLQP PSAAEDEPAR TLKRPRLVWT PQLHKRFVDA VAHLGIKNAV 60 PKTIMQLMSV DDEEVGDEES VEQPRTFINI GDDEEDEVNV VVEPMVVEPL YTFVGDPRET 120 VDVFILYFLA TRKGIVQSYV CEIMGQLLTT KDCNSLGHRE CVDNMVIIFA ATMFMYFEKR 180 STGSIKRIIF SPMFAVFIPV VSSGHWWCYA LKVCTMQFFV IDSLDKGIRG CSGIDKSIVC 240 FRVVVEW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-19 | 34 | 71 | 1 | 38 | Transcription factor LUX |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g03300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 3e-98 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014524446.1 | 1e-102 | uncharacterized protein LOC106780659 | ||||
TrEMBL | A0A1S3W1M0 | 1e-100 | A0A1S3W1M0_VIGRR; uncharacterized protein LOC106780659 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 6e-25 | G2-like family protein |