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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g02310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 628aa MW: 68582.7 Da PI: 5.9504 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 2e-07 | 275 | 295 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Vradi08g02310.1 275 PCPDFRK-GACRRGDMCEYAHG 295 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 8.4E-17 | 8 | 153 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3800 | 10 | 39 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 4.97E-16 | 12 | 139 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.38E-14 | 15 | 135 | No hit | No description |
Pfam | PF12796 | 2.4E-7 | 57 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0067 | 57 | 87 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.777 | 57 | 164 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0016 | 92 | 124 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.74 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 270 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 274 | 297 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-5 | 275 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 275 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 303 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 43 | 305 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MNHLTIETED SFASLLELAA NNDVEGFKRM IERDPSCVDE VGLWYSRQKG SRRMVNELRT 60 PLMVAATYGS IDVLDLILSL SGYDINKPCG LDKSTALHCA ASGGAENAVD VVILLLAAGA 120 DPNSVDGNGH RPVDVIVVPP KHETIRNSLE ALLQTDDSIA VCNLRVITAP SNAYSPPLST 180 SPENGSPSAP DFQLKSKLND GFVSSASEKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW 300 LHPAQYRTRL CKDGTSCSRR VCFFAHTAEE LRPLYVSTGS AVPSPRSSTS SAMEFAAAMN 360 MLPGSPSSMS VMSPSPFTPP MSPSANGMSH SSVGWPQPNV PALHLPGSNL HSSRLRSSFN 420 ARDIPMDEFD MLPEYDAQQQ QQLLNEFSCL SKQPNAMNRS GRIKTLTPSN LDDLFSSESS 480 SPRFADPALA SAVFSPTHKS AILNQFQQQQ SLLSPVNTNF SSKNVENPLL QAASFGVQTS 540 GRMKHRRSSS FEHGNNSEEP DFSWVQSLVK ESPTEIKENS TATVSSGAAA GSSSEVSNMS 600 TQMDSVDHAV LGAWLEQMQL DLVAQQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g02310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514213.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S3V791 | 0.0 | A0A1S3V791_VIGRR; zinc finger CCCH domain-containing protein 30 | ||||
STRING | XP_007145619.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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