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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g01990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 174aa MW: 19017.1 Da PI: 7.8369 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 40.1 | 9.9e-13 | 1 | 26 | 49 | 74 |
EEETTT--SS--S-STTTT------- CS SBP 49 fhelsefDeekrsCrrrLakhnerrr 74 fh lsefD++krsCrrrLa+hnerr Vradi08g01990.1 1 FHLLSEFDQGKRSCRRRLAGHNERRP 26 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 13.289 | 1 | 28 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.7E-7 | 1 | 25 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.37E-9 | 1 | 28 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
FHLLSEFDQG KRSCRRRLAG HNERRPDNNG RAGGFLMEFS SYPKLTLRTT LPTPRSAEPL 60 PGNHAATWQT GSGTPSEFFM HGSGSGGTSF LGSKHPFVES YTGFAAIHQL PNATSWYLKA 120 LDSPEGVPDL GLGQISPSLH SHLHGELDLP HHGRRHYMDL GDSRACESPQ WSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g01990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-110 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511371.1 | 1e-102 | squamosa promoter-binding-like protein 9 isoform X1 | ||||
TrEMBL | A0A1S3UZ66 | 1e-100 | A0A1S3UZ66_VIGRR; squamosa promoter-binding-like protein 9 isoform X1 | ||||
STRING | XP_007145670.1 | 3e-87 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 3e-10 | squamosa promoter binding protein-like 1 |