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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g00970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | E2F/DP | ||||||||
Protein Properties | Length: 510aa MW: 56340.5 Da PI: 5.1988 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 84.7 | 7.4e-27 | 176 | 241 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg Vradi08g00970.1 176 RYDSSLGLLTKKFINLVKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIHWKG 241 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.5E-29 | 173 | 243 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-34 | 176 | 241 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.48E-17 | 176 | 239 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-24 | 178 | 241 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 4.18E-27 | 254 | 371 | No hit | No description |
CDD | cd14660 | 1.66E-44 | 254 | 371 | No hit | No description |
Pfam | PF16421 | 4.7E-29 | 257 | 369 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MSTAAGPPDR RASPPRGAAG TTVRPALKRH LAFVTKPPFA PPDDYHSFSS IDSRRLADEA 60 VVVRSPVSTS VSSLRSQIHL RGSRIWNVLF CVECDYMKRK GGMNDSEGES HTQKWSNSPG 120 YTNVSNITNS PFKTPVSAKG GRTQKAKASK EGRSCPPTPI SNAGSPSPLT PASSCRYDSS 180 LGLLTKKFIN LVKHAEDGIL DLNKAAETLE VQKRRIYDIT NVLEGIGLIE KKLKNRIHWK 240 GIESSTSGEV DGDISVLKEE VEKLSLEEQG LDDQIREMQE RLRKLSENEN NRKCLFVTED 300 DIKNLPCFQV FLLLILAYSC KQNETLIAIK APHGTTLEVP DPEEAVDYPQ RRYRIILRST 360 MGPIDVYLIS QFEEKFEEIN GAELPMIPLA SSSESNEQVM TEMVPAECSG KEFEPQTQLS 420 SHVYSDINAS QEFAGGMMKI VPSDVDNDAD YWLLSDADVS ITDMWRTDST VDWNGVDMLN 480 PDFGIISRPQ TPSSGFVEVP TPGANSNHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 5e-24 | 171 | 242 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g00970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-145 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512110.1 | 0.0 | transcription factor E2FA | ||||
Swissprot | Q9FNY0 | 1e-147 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | A0A1S3V1C4 | 0.0 | A0A1S3V1C4_VIGRR; transcription factor E2FA | ||||
STRING | XP_007145806.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1947 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-140 | E2F transcription factor 3 |
Publications ? help Back to Top | |||
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