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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g31460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 577aa MW: 66737.1 Da PI: 7.5198 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.3 | 1.8e-16 | 29 | 113 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++ F +r+++s+k k+n+ + ++vCs+egk ++ k +t + + +C a + + ++ d+kw ++++ l+HnH+l+ Vradi07g31460.1 29 KFYTNYATTSEFALRTRSSRKDKDNN-VCYLRLVCSREGKYVSSIKP---DVKTLPCQTNECPAGISIARK-DNKWFIKSVALDHNHDLC 113 6*****************99996666.9999**********999888...99999**************99.9***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-13 | 29 | 113 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.3E-37 | 193 | 287 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.089 | 478 | 514 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.7E-6 | 479 | 510 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.0E-4 | 489 | 516 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MQILQSVMKP VWNKSLGFMC FDTMENAKKF YTNYATTSEF ALRTRSSRKD KDNNVCYLRL 60 VCSREGKYVS SIKPDVKTLP CQTNECPAGI SIARKDNKWF IKSVALDHNH DLCMNTSKLI 120 PGNRKLSMQA KHTLEVNDDA GVRINKSFLS IVNDAGGFEN MEFVEQDARN YIAQHRRSLY 180 TRTRVACEEF GDVVSFDTTY LTNKYDMPFA PFVGVNHHGH SILLGCGLLS SEDTVSFVWL 240 FESWLRCMGH KAPNGIITDQ CRAMVNAIAE VFPNTRHGWC LWHIMKKLPE KFQGFKNYVA 300 IKSDIHALVY DCGSPWDFEN GWEQLLTNHA LEGNDWFCTL YEERRKWVPC YLRSDFWAGM 360 STTQRSESMN AFFDGFINSS TTLQQFVVQF DNALRVKAQK EIQVDFSSLN TTIGYGSQSP 420 IERQFQLEYT HEEFEEVQTE FWSRMNCFIK NTLKDNFLNT YSIKEERMFE GKCADKFYTV 480 EFDPITNNTT CSCLLFEFRG IICRHSLLVF GQEDICNVPS KYVLQRWNKN ICRRHTLIIA 540 AYSTSKLQPT MQKYQLLCKK FYGIAEVACE SEVFSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g31460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511652.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S3V0D7 | 0.0 | A0A1S3V0D7_VIGRR; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_007134998.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-98 | FAR1-related sequence 5 |