PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g31460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 577aa    MW: 66737.1 Da    PI: 7.5198
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g31460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.31.8e-1629113190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      kfY +YA++  F +r+++s+k k+n+ +   ++vCs+egk  ++ k      +t + +  +C a + + ++ d+kw ++++ l+HnH+l+
  Vradi07g31460.1  29 KFYTNYATTSEFALRTRSSRKDKDNN-VCYLRLVCSREGKYVSSIKP---DVKTLPCQTNECPAGISIARK-DNKWFIKSVALDHNHDLC 113
                      6*****************99996666.9999**********999888...99999**************99.9***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1329113IPR004330FAR1 DNA binding domain
PfamPF105518.3E-37193287IPR018289MULE transposase domain
PROSITE profilePS5096610.089478514IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-6479510IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-4489516IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MQILQSVMKP VWNKSLGFMC FDTMENAKKF YTNYATTSEF ALRTRSSRKD KDNNVCYLRL  60
VCSREGKYVS SIKPDVKTLP CQTNECPAGI SIARKDNKWF IKSVALDHNH DLCMNTSKLI  120
PGNRKLSMQA KHTLEVNDDA GVRINKSFLS IVNDAGGFEN MEFVEQDARN YIAQHRRSLY  180
TRTRVACEEF GDVVSFDTTY LTNKYDMPFA PFVGVNHHGH SILLGCGLLS SEDTVSFVWL  240
FESWLRCMGH KAPNGIITDQ CRAMVNAIAE VFPNTRHGWC LWHIMKKLPE KFQGFKNYVA  300
IKSDIHALVY DCGSPWDFEN GWEQLLTNHA LEGNDWFCTL YEERRKWVPC YLRSDFWAGM  360
STTQRSESMN AFFDGFINSS TTLQQFVVQF DNALRVKAQK EIQVDFSSLN TTIGYGSQSP  420
IERQFQLEYT HEEFEEVQTE FWSRMNCFIK NTLKDNFLNT YSIKEERMFE GKCADKFYTV  480
EFDPITNNTT CSCLLFEFRG IICRHSLLVF GQEDICNVPS KYVLQRWNKN ICRRHTLIIA  540
AYSTSKLQPT MQKYQLLCKK FYGIAEVACE SEVFSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g31460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511652.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3V0D70.0A0A1S3V0D7_VIGRR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_007134998.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-98FAR1-related sequence 5