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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g30210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 385aa MW: 41456.1 Da PI: 8.4909 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.1 | 7.8e-41 | 96 | 172 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+qa Vradi07g30210.1 96 CLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQA 172 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-33 | 90 | 157 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.804 | 93 | 170 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.19E-38 | 94 | 173 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-30 | 96 | 169 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDWNLKAASW DLSEVDQANL PNMETVEGSS RYGMFTSKGE FSVDLKLGQV GNSGTESVLT 60 KSKDAVGLSK ITSSSSSSGS SKRARALGNA TQTVSCLVDG CHSDLSNCRD YHRRHKVCEV 120 HSKTAQVTIG GQKQRFCQQC SRFHSLEEFD EGKRSCRKRL DGHNRRRRKP QAEPPLTRSG 180 SFLSNYQGTQ LLPFSSSHVY PSTTVMNPTW GGIVASGDVR IHGHNQQGEL FLGTSPTGYK 240 EGKQLAFLQA DQTLNNQSPH LAGAYVGQAH MFMRSGPYSE SSGLRCKMLC DSLTSSVHDS 300 SSRALSLLSS PQPHSPGNGL SQIVNPHSPL MQPLGLSLHD GNSLGPVDPV LGLNGSDHSS 360 SMYNIGSNGS QGNEAPPVFP FQWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 96 | 169 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 169 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g30210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509709.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_014509710.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_022640047.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_022640048.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_022640049.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A1S3UUK8 | 0.0 | A0A1S3UUK8_VIGRR; squamosa promoter-binding-like protein 13A | ||||
STRING | XP_007160020.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-71 | SBP family protein |