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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g28840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 360aa MW: 39934.8 Da PI: 7.0961 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.6e-07 | 124 | 145 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck Gd C +aHg Vradi07g28840.1 124 SACPDFRK-GNCKKGDACEYAHG 145 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 72 | 109 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-5 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.432 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 124 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 124 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 155 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MMLGETHRAN PTVHIPPWPL IHESSPEIFS PYTANADYSP YSLQEALTAL QHYDSTDAES 60 DSDVPSLESD VPVDAYSCDH FRMFEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKYH 120 YSGSACPDFR KGNCKKGDAC EYAHGVFECW LHPARYRTQP CKDGTSCRRR VCFFAHTPEQ 180 LRVLPQQSPR SADSYDGSPL RHAIESSKTA APFVSSPGSL SPPVESPPMS PMTRSGSLSV 240 NEMVASLRNL QLGKIKSLPA SWNVIGSPGF GSPRGPVIRP GFFSLPSTPT QAPVRGGVNY 300 FDMWDQSCEE EPVMERVESG RNIRARMFEK LSKENVLDGP GSGDPVVPDV GWVSELVSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g28840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510554.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-133 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1S3UXE6 | 0.0 | A0A1S3UXE6_VIGRR; zinc finger CCCH domain-containing protein 20 | ||||
STRING | XP_007160259.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-133 | C3H family protein |
Publications ? help Back to Top | |||
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