PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g28840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 360aa    MW: 39934.8 Da    PI: 7.0961
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g28840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-07124145426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C++f++ G Ck Gd C +aHg
  Vradi07g28840.1 124 SACPDFRK-GNCKKGDACEYAHG 145
                      67******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0872109IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432121147IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5124145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5124147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643155179IPR000571Zinc finger, CCCH-type
SMARTSM0035614155178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMLGETHRAN PTVHIPPWPL IHESSPEIFS PYTANADYSP YSLQEALTAL QHYDSTDAES  60
DSDVPSLESD VPVDAYSCDH FRMFEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKYH  120
YSGSACPDFR KGNCKKGDAC EYAHGVFECW LHPARYRTQP CKDGTSCRRR VCFFAHTPEQ  180
LRVLPQQSPR SADSYDGSPL RHAIESSKTA APFVSSPGSL SPPVESPPMS PMTRSGSLSV  240
NEMVASLRNL QLGKIKSLPA SWNVIGSPGF GSPRGPVIRP GFFSLPSTPT QAPVRGGVNY  300
FDMWDQSCEE EPVMERVESG RNIRARMFEK LSKENVLDGP GSGDPVVPDV GWVSELVSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g28840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510554.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-133C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3UXE60.0A0A1S3UXE6_VIGRR; zinc finger CCCH domain-containing protein 20
STRINGXP_007160259.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-133C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]