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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g27330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 630aa MW: 69926.1 Da PI: 6.667 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.1 | 4.3e-20 | 127 | 214 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F Vradi07g27330.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFL 214 99****************************964333..4459***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-36 | 115 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-36 | 121 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-17 | 125 | 213 | No hit | No description |
SMART | SM01019 | 2.4E-15 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-18 | 127 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.277 | 127 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-5 | 298 | 323 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 11.449 | 539 | 629 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MAFSASTHKS AGIHPGAIND DLYKELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASIH 60 EGLEQQMPSF NLPSKILCKV VNVHLRAESE TDEVYAQITL LPEVDQSEVT SPDDPLTEIP 120 RAKIHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR 180 HIFRGQPKRH LLTTGWSVFV SSKKLVAGDA FIFLRQCFLF PSCFCSLMLF VILAVLCCIL 240 YSRGENGELR VGVRRVMRQQ SNAPSSVISS HSMHLGVLAT ASHAITTGTL FSVFYKPRFS 300 GTIVGVGDNK SSVWPDSEWR SLKVQWDEPS SILRPDRVSS WELEPHVSTT PANPQPTQRN 360 KRARPLILPS TVPDSSLQGM WKSAAESTSF SYCDPQHGRG LYPSPKFNPS ANNFIGFSGN 420 SFVGPPSNKS IYWSNRMESS LESISAIAFK EAGEKRQGTG NGCRLFGIQL LENSNAEGSL 480 QTVSLSGRLG DDRFIPSLDV ESDQHSEPSN ANRSDIPSVS CDAEKSCLSP QELQSKQIRS 540 CTKVHMQGMA VGRAVDLTRF CGYEDLLIKL EEIEFCSVVR KIFIYTTEEV KKLSPKIGLQ 600 VNEKLKSNKQ DWEEIFNPEE QSSNVGPSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 345 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 345 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 345 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g27330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509361.1 | 0.0 | auxin response factor 1 | ||||
Refseq | XP_014509362.1 | 0.0 | auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A1S3UTR4 | 0.0 | A0A1S3UTR4_VIGRR; Auxin response factor | ||||
STRING | GLYMA07G40270.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6802 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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