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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g24870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 135aa MW: 13824.6 Da PI: 10.2214 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.4e-19 | 34 | 67 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ CgttkTplWR gp g+k+LCnaCG++ rkk+ Vradi07g24870.1 34 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 67 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.8E-13 | 28 | 81 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-13 | 28 | 68 | No hit | No description |
PROSITE profile | PS50114 | 12.611 | 28 | 64 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.7E-16 | 32 | 68 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.84E-13 | 33 | 68 | No hit | No description |
Pfam | PF00320 | 4.9E-17 | 34 | 68 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 34 | 59 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEVVVQGSEG EDSNPNAPSS GNSPSSNNEQ KKTCADCGTT KTPLWRGGPA GPKSLCNACG 60 IRSRKKKRAI LGISKGNNED GRKGKKSGGA GAAAIGGGAL GREVLLHRSH WKKLGEEEKA 120 AVLLMSLSYG SVYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g24870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092836 | 2e-76 | BT092836.1 Soybean clone JCVI-FLGm-12I15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507900.1 | 4e-87 | GATA transcription factor 16 | ||||
Swissprot | Q9FJ10 | 3e-35 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A1S3UPH9 | 9e-86 | A0A1S3UPH9_VIGRR; GATA transcription factor 16 | ||||
STRING | XP_007154340.1 | 5e-64 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-31 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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