PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g24870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 135aa    MW: 13824.6 Da    PI: 10.2214
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g24870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.4e-193467134
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                     C+ CgttkTplWR gp g+k+LCnaCG++ rkk+
  Vradi07g24870.1 34 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 67
                     ********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-132881IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-132868No hitNo description
PROSITE profilePS5011412.6112864IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.7E-163268IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.84E-133368No hitNo description
PfamPF003204.9E-173468IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403459IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEVVVQGSEG EDSNPNAPSS GNSPSSNNEQ KKTCADCGTT KTPLWRGGPA GPKSLCNACG  60
IRSRKKKRAI LGISKGNNED GRKGKKSGGA GAAAIGGGAL GREVLLHRSH WKKLGEEEKA  120
AVLLMSLSYG SVYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g24870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0928362e-76BT092836.1 Soybean clone JCVI-FLGm-12I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507900.14e-87GATA transcription factor 16
SwissprotQ9FJ103e-35GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A1S3UPH99e-86A0A1S3UPH9_VIGRR; GATA transcription factor 16
STRINGXP_007154340.15e-64(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-31GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]