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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g24170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 932aa MW: 103273 Da PI: 7.9765 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.3 | 1.4e-40 | 85 | 162 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl +ak+yhrrhkvC+vhska+v+lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Vradi07g24170.1 85 VCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 162 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-31 | 79 | 147 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.624 | 83 | 160 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-37 | 84 | 165 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.6E-29 | 86 | 159 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 1.7E-7 | 201 | 226 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.66E-7 | 662 | 818 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.7E-7 | 707 | 817 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.51E-7 | 708 | 817 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 932 aa Download sequence Send to blast |
MCFFRWVCKL DVVAKREGKK ELEKRRRRVI GEGEGEGMND EGGSLSLNLG GHGYPFMVEG 60 EEKGGKKTKV IGTTTASATT SNRAVCQVQD CTADLGNAKD YHRRHKVCDV HSKATVALVG 120 DVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNRRRRKT HPDVTVVNEG SHNSGRGSSY 180 LLMSLLRILT NLHTNGSDHT RNQDILSHLL RNLASLAAPN NDRTLASLLE NSKGLLNDGT 240 SGGAHDEPNL HSNTPEASRP SGSSLQIDNG FISQDPPISM AQCETRPTNG GVENLRPPSG 300 APFSSISQSK GNLPCQLTAT ETTLRRNNLN NVDLNNVYSD VQNTDENHKK PYPHVASEVG 360 SSDLPSWLQC ASLKSSGEAK SCTDRIVFKL FGKNPSNFPL LLRSQILNWL SHSPTEIESY 420 IRPGCIILTI YLCLEKSAWE ELCCNLGSSL RKLLSSSNDT FWRTGWVFAR VQHSVAFLYN 480 GQVVLDVPLC LKSSHHCTIS CIKPLAVPAS ARAHFIVKGC NLSQSSTRLL CALEGKYVVH 540 ASCHDLIGED EESIQHLNFS CHIPDVTGRG FIEVEDHCLR SCSFPFIVAE KEVCSEICKL 600 ENVIEAAETT NDFQIKNQQM EEKAQALNFL QEMGWLLHRS RMKVRLGPMA PIHDLFQFNR 660 FTWLVDFSMD HGWCAVMKKL LDIIFDGGVD TGEQASIELA LLDLSLLHKA VKRNNRPMVE 720 LLLRFVPVKT SDGADSEVKQ VEKASDRFLF RPDTVGPAGL TPLHVAATMR GSENVLDALT 780 DDPGMVGIEV WKSARDSAGL TPNDYACLRG YYSYVQLVER KTKKKGERLH VVDIPGTVAD 840 SGIRKQKQSG KVSSLQTEKI ETTEMGSNCR VCQQKLVYGG IRTGVVYRPV LLSMVAIAAV 900 CVCVALLFKS SPRVYYVFQP FNWESLEYGT I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-30 | 76 | 159 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 28 | KRRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g24170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506940.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
Refseq | XP_022639731.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A1S3ULS2 | 0.0 | A0A1S3ULS2_VIGRR; squamosa promoter-binding-like protein 1 | ||||
STRING | XP_007154455.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |