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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g22880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 307aa MW: 34084.7 Da PI: 9.7657 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.7 | 1.8e-19 | 173 | 206 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk + Vradi07g22880.1 173 CADCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 206 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.09E-12 | 166 | 207 | No hit | No description |
SMART | SM00401 | 5.1E-19 | 167 | 218 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.69 | 167 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-15 | 171 | 206 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.75E-13 | 172 | 200 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 173 | 198 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.5E-17 | 173 | 206 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MIPAYRHSSV IPLDLNEDQN HELFIPTHHA YPSFSYLSSP YPVLFNPPDQ EDGSHSWEPT 60 KHLSGHEEAE KINPTMGSWD HSVAQSELKV TVCKQKERSE DHVAAAEDGS VKLMPSKMRM 120 MQKMMGPDQT GAYIEDSTVH KFEDEKQPLS PLGTDNSSSN NCSNHSNNTV RVCADCHTTK 180 TPLWRSGPRG PKSLCNACGI RQRKARRAMA AAASGNGTVI LKTEKSVKGN KLQKKEKKVR 240 TQVAPQMKKK RKHGVGAKPS QSRNKFGFED LTLRLRKSLA MHQVFPQDEK EAAILLMALS 300 YGLVQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g22880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507425.1 | 0.0 | GATA transcription factor 21 isoform X1 | ||||
TrEMBL | A0A1S3UN56 | 0.0 | A0A1S3UN56_VIGRR; GATA transcription factor 21 isoform X1 | ||||
STRING | XP_007154661.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 3e-29 | cytokinin-responsive gata factor 1 |