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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g22280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 436aa MW: 47593.2 Da PI: 8.7626 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.3e-11 | 150 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Vradi07g22280.1 150 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 206 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 47.6 | 4.3e-15 | 249 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Vradi07g22280.1 249 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 300 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.80E-18 | 150 | 216 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-14 | 150 | 216 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.7E-9 | 150 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-22 | 151 | 220 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-12 | 151 | 215 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.174 | 151 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 152 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-10 | 249 | 300 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-18 | 249 | 310 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.41E-24 | 249 | 310 | No hit | No description |
SMART | SM00380 | 1.5E-33 | 250 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 250 | 308 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-18 | 250 | 309 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MDSSSSSPPN NNSLAFSLSN HFPNPSSSHS TSPLSLFHSF TSYPSLTLTG SNTVDASPEA 60 PGRVGATNLS IFTAAPKFED FLGSSATPDT TATGAPPQLP QFSTDNNLYE SELKTTIAAC 120 FPRGFAVEAS TEPQKPSPKK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR 180 KGRQGGYDKE DKAARAYDLA ALKYWGPTTT TNFPISNYEK ELGEMKNMTR QEFVASLRRK 240 SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG 300 LNAVTNFDMS RYDVKSIANS TLPIGGLSSK NKTSADSASE SKSHEASRSD ERDPSSASSV 360 TFGSQQQPSS STLSFAIPIK QDPSDYWSIL GYHNPTLDNS GHYVIWNCTE NGTYNTNTAF 420 FGVMPCPTLN SNPFT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g22280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505771.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-139 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1S3UIB4 | 0.0 | A0A1S3UIB4_VIGRR; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | XP_007154750.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-134 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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