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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g20020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 311aa MW: 34486.7 Da PI: 8.0915 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1e-08 | 74 | 98 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ G C+ G++C+FaHg Vradi07g20020.1 74 FKTRMCAKFRV-GACRNGENCNFAHG 98 69*********.*************9 PP | |||||||
2 | zf-CCCH | 29 | 1.9e-09 | 134 | 158 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lC+ ++ + +C+yGd+C+F H Vradi07g20020.1 134 QKMKLCKKYYIGDECPYGDKCSFLH 158 5999*******55************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-14 | 70 | 106 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 71 | 104 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-4 | 73 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-7 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.76 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-7 | 134 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-8 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MMSPPSFSTD TDAIEVRLQF PMNNDSLEQH SQQDQPPSIK RARIGDNNNS YPMACPPRMI 60 QNPNFNKGTS HIFFKTRMCA KFRVGACRNG ENCNFAHGVE DMRQPPPNWQ ELVGLRNEER 120 LPSGNWDDDQ KIIQKMKLCK KYYIGDECPY GDKCSFLHED PAKFRDDSGR YRESTAINIG 180 TNGSPKAYGD PSNCLESNKV VNTGLNVSRS NCFCVANPEL QFPGGRNEAE TAGAAPVSNK 240 ATIPTLARAT PVPSNDAPPS QRASVPPANE EEQGKKHLLK WKGPKKINRI YGDWLDDLPL 300 GHNLPGRVGI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g20020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014508003.1 | 0.0 | zinc finger CCCH domain-containing protein 39 isoform X1 | ||||
Swissprot | Q9LT81 | 8e-68 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A1S3UPK1 | 0.0 | A0A1S3UPK1_VIGRR; zinc finger CCCH domain-containing protein 39 isoform X1 | ||||
STRING | XP_007154979.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-63 | C3H family protein |