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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g19120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 110aa MW: 12381.4 Da PI: 10.3797 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42.6 | 8.4e-14 | 6 | 32 | 9 | 35 |
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp+ ++ LCnaCG +y+k+g+ Vradi07g19120.1 6 TPLWRNGPEDKPVLCNACGSRYKKRGS 32 ********88888************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 8.55 | 1 | 31 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.0032 | 3 | 54 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-10 | 4 | 32 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.09E-7 | 5 | 33 | No hit | No description |
CDD | cd00202 | 7.36E-10 | 6 | 50 | No hit | No description |
Pfam | PF00320 | 2.7E-11 | 6 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MVSSVTPLWR NGPEDKPVLC NACGSRYKKR GSLAEKSGRL WSTKIPTKKR SEVVYKEITP 60 LERFYIRLLK MSKNHRNTNE TSSEEVLLLN NANNFIPSTE IGIGCVILK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g19120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-114 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027920403.1 | 3e-64 | GATA transcription factor 27-like | ||||
TrEMBL | V7CN03 | 1e-54 | V7CN03_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159598.1 | 2e-55 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12747 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 8e-12 | GATA transcription factor 27 |