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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g17950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 187aa MW: 20748.7 Da PI: 4.2224 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 31.5 | 4.1e-10 | 36 | 123 | 5 | 85 |
NF-YB 5 drflPianv.srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala.........tlGfedyveplkv 85 d+f+Pi v + + ++Pa + +d q ++efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ + Vradi07g17950.1 36 DNFVPIIFVmVSSIEAIVPACCHALDDVN---QFVIVEFINLISSESNEVCNREEKRTIAPEHVLKALQvfcisiaspVLGFGEYIEEVYA 123 66777765514556777777766655554...5569****************************988752222222335899999988754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.9E-4 | 2 | 28 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-8 | 67 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.4E-18 | 67 | 169 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.02E-17 | 67 | 171 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MTKIIKEMLP PDVRVARDAQ DLLIECCVGQ NFIINDNFVP IIFVMVSSIE AIVPACCHAL 60 DDVNQFVIVE FINLISSESN EVCNREEKRT IAPEHVLKAL QVFCISIASP VLGFGEYIEE 120 VYAAYEQHKM ETMQDSLKGG KWSNGAEMTE EEALAEQQRM FAEARARMNG GGITSKQPDT 180 DQSLDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-20 | 1 | 165 | 21 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g17950.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136794 | 2e-86 | BT136794.1 Lotus japonicus clone JCVI-FLLj-3M19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509844.1 | 2e-86 | protein Dr1 homolog isoform X3 | ||||
Refseq | XP_014509845.1 | 2e-86 | protein Dr1 homolog isoform X3 | ||||
Refseq | XP_014509847.1 | 2e-86 | protein Dr1 homolog isoform X5 | ||||
Refseq | XP_017441292.1 | 2e-86 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_017441303.1 | 2e-86 | PREDICTED: protein Dr1 homolog isoform X3 | ||||
Refseq | XP_017441308.1 | 2e-86 | PREDICTED: protein Dr1 homolog isoform X3 | ||||
Swissprot | P49592 | 4e-66 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A1S3UV60 | 4e-85 | A0A1S3UV60_VIGRR; protein Dr1 homolog isoform X5 | ||||
TrEMBL | A0A1S3UVB7 | 5e-85 | A0A1S3UVB7_VIGRR; protein Dr1 homolog isoform X3 | ||||
STRING | XP_007155169.1 | 8e-84 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 1e-68 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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