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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g17680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 555aa MW: 60780.7 Da PI: 7.3884 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135 | 2.3e-42 | 174 | 249 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Vradi07g17680.1 174 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 249 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-33 | 168 | 235 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 171 | 248 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-39 | 172 | 251 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-31 | 174 | 247 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MESWSFVPEE KESVSNEALS PPNTLGRTIN SFLGWELKTP CGFSNDMLGL GQHPIENQGF 60 EELGFPEMLG KHLSDDLIAS VSSRKVDAGR HQQHQHSDRI TGTVVDAPSG FSQRGDSNSK 120 LSNSNSLIDL KLGRFADHGD AIDAGFSKVL SSSESSTPPK RVRVSGVHSQ TAYCQVYGCN 180 KDLSSCKDYH KRHKVCEVHS KTATVIVNGI EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG 240 HNERRRKPQM GIHPGKSGRL LQPCGDSRFQ GSMLTSSFIR PEMLPSGVMC SEKYGVSSFW 300 RPIKAEHGTG FRHLSSMPVS NGHPQSRSLF PSYNGKQFPF LHENCATSTT GSIFCESNSH 360 YPPALGAQNS GLRPLFQDTI GNEDFNVFDT ASTVQGLSGI SDSCCALSLL SSQSQNSSSQ 420 SSGIPLAHSM VIPSGHGHHY NMSQVSEKIG ISSQTSSSRV SDSFPSELNH ADGSHLSPVL 480 ISDHNDIVNF DMADGIFHGS EFMNVKDRLP CEDGATIDLL QLSSQLQRVE HERQSLQEKG 540 RASCEGHLRK RRPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-29 | 174 | 247 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g17680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510370.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_022639361.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A1S3UWE8 | 0.0 | A0A1S3UWE8_VIGRR; squamosa promoter-binding-like protein 6 | ||||
STRING | XP_007155210.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-51 | SBP family protein |