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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g17090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 456aa MW: 49462.5 Da PI: 8.3164 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.3 | 1.9e-39 | 102 | 162 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s Vradi07g17090.1 102 PDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 162 78999*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 95 | 159 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.0E-32 | 103 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.537 | 106 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 108 | 144 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MQYFFKKTAL PSLLPNTIVF PVMDVISAMK IDAGVENVTE EELEADPSPS SGETKDSGTS 60 PEAIVNPKTP SIEEETAKSK ADKSEKEQGD AAHSQEKTLK KPDKVLPCPR CKSMDTKFCY 120 YNNYNVNQPR YFCKACQRYW TAGGTMRNVP VGAGRRKNKN SASHYRHISI SEALQAARID 180 SPNGTHLPTL KGNGRVLSFG LDAHAPICDS MASVLNLGEK KVPDGTKNGF QHGFEDQRLP 240 IPRKSGENGD DSSTTSSITV SNSMGESSKN TFQPQPVLQH HGFLPQLPCV PWPYTWNSPV 300 PPPALCPSGY ALSFYPPATF WNCGMPGNWN VPWFSSLSSA SNPNSPGSGP NSPTLGKHSR 360 DGDMIKQDSL HKEEGSKPRN GGVLVPKTLR IDDPNEAAKS SIWATLGIKN ESVSGGGMFK 420 AFQSKKEEKN HVEASPVLMA NPAALSRSLN FHENS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g17090.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510300.1 | 0.0 | cyclic dof factor 3 | ||||
Swissprot | Q8LFV3 | 1e-113 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A1S3UW85 | 0.0 | A0A1S3UW85_VIGRR; cyclic dof factor 3 | ||||
STRING | XP_007155301.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-105 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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