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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g15340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 325aa MW: 36886.5 Da PI: 4.4953 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 82 | 135 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe+++++ e++++LAk lgL+ rqV +WFqNrRa++k Vradi07g15340.1 82 KKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWK 135 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128 | 4e-41 | 81 | 173 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls++qv++LE+sFeee+kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdye L+++y++lk++ e L ke+++L++e+++ Vradi07g15340.1 81 EKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYELLHESYESLKANYEILLKEKDKLKSEVAH 173 69**************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.17E-19 | 69 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.67 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.2E-19 | 80 | 141 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-16 | 82 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.88E-17 | 82 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 84 | 144 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 108 | 117 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 117 | 133 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.0E-14 | 137 | 178 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAAGRAFSDI TAFLRNQTAP PTSQPLDSLF LSSSTAPFLG SRSMMSFEGE GGKGCNGSFF 60 RAFDIDENGD ECMDEYFHQP EKKRRLSANQ VQFLEKSFEE ENKLEPERKT KLAKDLGLQP 120 RQVAIWFQNR RARWKTKQLE KDYELLHESY ESLKANYEIL LKEKDKLKSE VAHLSEKVVA 180 REKEEGQLKQ AESGTKRLQE QDQEPHQRPV LDSVSEGEGS KVSCVVGGCK QEDISSARSD 240 ILDSDSPHYT DGVHSAVLEH GDSSYVFEPD QSDMSQDEED NLSKNLYPSY LFPKLEDADY 300 SDPTESSCNF GFSEEDHGLW NWEY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 137 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g15340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510539.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S3UXD0 | 0.0 | A0A1S3UXD0_VIGRR; homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_007155341.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-46 | homeobox 1 |