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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g15100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | E2F/DP | ||||||||
Protein Properties | Length: 335aa MW: 37972.6 Da PI: 9.2158 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 46.8 | 4.8e-15 | 11 | 44 | 38 | 71 |
E2F_TDP 38 dvknkrRRiYDilNVLealnliekkekneirwkg 71 d++ +rRRiYDi+NVLe+++++++k+kn+++wkg Vradi07g15100.1 11 DERVERRRIYDIVNVLESIGVLSRKAKNQYTWKG 44 56679***************************98 PP | |||||||
2 | E2F_TDP | 67.3 | 2e-21 | 94 | 185 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllek...........seegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ + + + ++l+e+ak L+ + +++k+RR+YDi+NVL+++nliek ++k+++rw g Vradi07g15100.1 94 RREKSLALLTQNFVKLFVCsnvridnfdstLQVELISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtsdTRKPAFRWLG 185 689*************999999999999866669******************999**************************99*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 2.3E-4 | 1 | 44 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.51E-10 | 7 | 45 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.3E-12 | 11 | 44 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.4E-13 | 14 | 45 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.8E-21 | 91 | 187 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.1E-28 | 94 | 185 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-11 | 96 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 5.7E-18 | 96 | 185 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVVPWVSNGG DERVERRRIY DIVNVLESIG VLSRKAKNQY TWKGFAAIPL TLRELKVSDD 60 EDDEETQSNA ATGSQNDKLN PKSTQPKSLK NENRREKSLA LLTQNFVKLF VCSNVRIDNF 120 DSTLQVELIS LDEAAKLLLG DAHNTSIMRT KVRRLYDIAN VLSSMNLIEK THTSDTRKPA 180 FRWLGPEGKT WNESLHKSNQ NESRKRAFGS DITNISFERN KVELFTNGDL NSNPKKLKIE 240 NDRGPDQADE NNLKQDTKQT SKSYQFGPFA PACVPGVGAS GNNNVKQVHD WDSLVTTHSP 300 QYQNEALRDL FSHYMEAWKS WYSEIAAKRP LKIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 3e-26 | 14 | 177 | 43 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g15100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507184.1 | 0.0 | E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 4e-98 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A1S3UMK7 | 0.0 | A0A1S3UMK7_VIGRR; E2F transcription factor-like E2FE isoform X2 | ||||
STRING | XP_007155383.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-100 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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