PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g14740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 330aa    MW: 35862.2 Da    PI: 7.2554
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g14740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.58.1e-4052112262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +e+alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  Vradi07g14740.1  52 QEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 112
                      6899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-2850110IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3354110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05956110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGFSSLHVCM NSSDQWLQGT IHEECGVDSS SPSADMLPCS RPMTERRVRP SQEQALKCPR  60
CESTHTKFCY YNNYSLSQPR YFCKTCRRYW TKGGTLRNIP VGGGCRKNKK VSTKKHNDHQ  120
PAINQNQTQP AGPSYIHNHK DLQHSFLDVQ FSHLNNILGT NAGVLGNPNF MDSKYSMGML  180
ENPGHIDFME SGLDGMNMIR GSTRSLDVLE NSDMSVGGGG VGLGDMSGYN GLPLNYQGLS  240
SAAFGGMSLD GGISNVGSYI MDSCQRLMLP YDGGHNILNG SVDVKPNPKL LSLEWQDQAC  300
SEAEKVSLGY LNGSGSWSGY GSSTTNPLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g14740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507559.10.0dof zinc finger protein DOF5.6
TrEMBLA0A1S3UNP20.0A0A1S3UNP2_VIGRR; dof zinc finger protein DOF5.6
STRINGXP_007155431.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.12e-50Dof family protein