PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g14640.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 483aa    MW: 52499.9 Da    PI: 5.1429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g14640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-10140162426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C f+++tG Ck+G +CkF+H+
  Vradi07g14640.1 140 EDCAFYMKTGNCKFGFNCKFNHP 162
                      89********************8 PP
2zf-CCCH27.74.7e-09188208525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C++++r+G Ck+G +Ck++H
  Vradi07g14640.1 188 ECKYYQRSGGCKFGKSCKYNH 208
                      7******************** PP
3zf-CCCH41.62.1e-13235259226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Ck+G++CkF+H+
  Vradi07g14640.1 235 GERECPYYMRTGSCKFGANCKFNHP 259
                      789*********************9 PP
4zf-CCCH29.41.4e-09369395127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f++tG Ck+ ++CkF+H++
  Vradi07g14640.1 369 PGEPECSYFLKTGDCKFKSNCKFHHPK 395
                      5799*********************96 PP
5zf-CCCH35.61.5e-11416440226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C++++r+G+Ck+G+ CkF H+
  Vradi07g14640.1 416 DQSVCSHYSRYGICKFGPACKFDHP 440
                      5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5135164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211136164IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4136163IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-8140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4142161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967183211IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4183210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5186213IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-7188208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4189210IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77233261IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-11235259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6236261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5239258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061368396IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4368395IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-7370395IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5373398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6412440IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4414441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577414442IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9416440IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4419440IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEASESDSAP LSISNGEDPQ LGASSPPPSP PPQSSDLNHA AEHVILSAEL QSKLDLKVED  60
ESEGKVSDLN DGGGVCDEET AKGDGDSRGS ESNSWNEDVG VGADEDGVGI GDVHGDDGEE  120
TKEDRNSDVT HHYPLRPEAE DCAFYMKTGN CKFGFNCKFN HPIRRKTQAI REKAGEREEP  180
TDRSSSTECK YYQRSGGCKF GKSCKYNHTR GKISTTPAPV PVFELNFLGL PIRQGERECP  240
YYMRTGSCKF GANCKFNHPD PTVGGCDPPS GFGNGGPISL QGVSRPSVPS WSSPRSLNEA  300
SPFVPMMLSP TQGVSTQSSD WNGYQASVYL PERNMHPPSS FVLNNPAVDT NVYLHHQKQM  360
SVEEFPERPG EPECSYFLKT GDCKFKSNCK FHHPKNRISR LPPCNLSDKG LPLRPDQSVC  420
SHYSRYGICK FGPACKFDHP INLQPLMMSG LGDQSYSNSA SVEVPGIGET TAETDVTIQQ  480
SV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g14640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510155.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S3UVU80.0A0A1S3UVU8_VIGRR; zinc finger CCCH domain-containing protein 43
STRINGXP_007155512.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]