![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi07g13890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 379aa MW: 42044.1 Da PI: 5.2113 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.5 | 2.4e-15 | 215 | 251 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Vradi07g13890.1 215 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 251 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 13.219 | 50 | 85 | IPR010399 | Tify domain |
SMART | SM00979 | 1.3E-6 | 50 | 85 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.0E-10 | 53 | 84 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 9.286 | 121 | 163 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.7E-11 | 121 | 152 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.893 | 209 | 266 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.1E-12 | 209 | 262 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-12 | 211 | 263 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 213 | 256 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.46E-14 | 214 | 257 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 215 | 242 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-13 | 215 | 251 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
MDTVNNHSQN GEEQPPPPGT ALAMQVVHYS NGSYEGEEAA TPVGHASTAM HARTSELTIS 60 FEGEVYVFPA VTPQKVQAVL LLLGGQETPN TVPTPDFLLQ QNSQDIREIN DPSRCSKLSR 120 RIASLVRFRE KRKERCFEKK IRYTCRKEVA QSNIPLMPVP LFLMAASMVF EVCIGDWMHR 180 KNGQFASLKE DYKSHAENWD SSNAIPGPES TERRCQHCGI SEKSTPAMRR GPAGPRSLCN 240 ACGLMWANKG TLRDLTKAGR IAFEQNELDT SADIKPSKAE AEHSCAKQDK EGSPEETKPV 300 QMDSRRSPEK TNEQFIIGTA ESVTDKLSIQ VENHALSLHE QDTLEDLANA SGTEFEISAG 360 FDEQVDIDDS NMRTYWLI* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi07g13890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-78 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510682.1 | 0.0 | GATA transcription factor 24 | ||||
Swissprot | Q8GXL7 | 6e-58 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A1S3UXJ0 | 0.0 | A0A1S3UXJ0_VIGRR; GATA transcription factor 24 | ||||
STRING | XP_007159158.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.1 | 2e-50 | ZIM-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|