PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g12180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 534aa    MW: 58953.2 Da    PI: 6.6206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g12180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.2e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Vradi07g12180.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                     ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-11545No hitNo description
CDDcd002022.09E-16654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.9E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAENADYEDQ  60
KVSRVKSISL NKNKEVKLVK RKQNYDNAAS GGFVPDYNQG HLKVVDEDTS NRSSSGSAIS  120
NSESCAQFGG TDASDLTGPA QSVVWDAMVP SKKRTCSGRP KPSSVEKLTR DLCTILHEQQ  180
SCFSASSEED LLLESDTPMV SVEIGHGSIL IRHPSSIARD EESEASSLSV DNKQCLMNEA  240
YSFSSTIPLY SSDHSGMNFS SQGIEKIENS AVQIMQQEKL ERHVFLSSLQ SFIILDVVNY  300
EEFMRNLTKE EQQQLLKYLP VVDTSNFIDS LKNMFSSFQF KENLTYFQQL LGEGVFDISL  360
LGTKPEEWKT LKRLVLSNMS KSKWVEHYNF LKKCENKAGK ANGPGSTATE SSNITNAKRM  420
REHDSQNQNF AELKTTMRSP KRVIMNPVCE GKEVVEEGSS CSPKSLFSLP HGVGGLHMLD  480
SCNYVGESSE DLLLDVPSNS SFPQAELLLP TLSYGAKVCT TSSSVHSTVT HRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g12180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509796.10.0GATA transcription factor 26
SwissprotQ8W4H11e-133GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S3UUP40.0A0A1S3UUP4_VIGRR; GATA transcription factor 26
STRINGXP_007155707.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-128GATA transcription factor 26