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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g11840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 563aa MW: 62927.6 Da PI: 6.7057 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.8 | 1.8e-26 | 324 | 378 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL +++A+P++ilelmkv+gLt+++v+SHLQkYR++ Vradi07g11840.1 324 KMKVDWTPELHKKFVKAVEQL-SIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 378 5689*****************.9*******************************96 PP | |||||||
2 | Response_reg | 25.4 | 7e-10 | 20 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHT..TTSEEE.EEESTTT.HHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireee..pklpii.vvtahge.eedal 87 vl+ + + + + +r le +y +v ++ d eal + + +++ ++ ++ + G+++l++ + + + pi vvt+++ +++ Vradi07g11840.1 20 VLLLEGDSISAAEIRAKLEAMDY-NVSTFCDENEALSAISSRPesFHIAIVEVSSSSsQGGFKFLENAKDLPtiMIFPIShVVTSNNHcLNTMM 112 567777778888899999*****.***************666666***********97899******99999776667752566777789**** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 +++ +Ga +flsKp ++++l++ Vradi07g11840.1 113 KCIALGAVEFLSKPLSEDKLRN 134 *******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.7E-14 | 16 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.9E-15 | 16 | 171 | No hit | No description |
PROSITE profile | PS50110 | 22.305 | 19 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-6 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.24E-7 | 21 | 139 | No hit | No description |
PROSITE profile | PS51294 | 12.07 | 321 | 380 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 322 | 381 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-17 | 322 | 381 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-23 | 324 | 378 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-6 | 327 | 376 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MVFTANDLQE WKDFPKGLKV LLLEGDSISA AEIRAKLEAM DYNVSTFCDE NEALSAISSR 60 PESFHIAIVE VSSSSSQGGF KFLENAKDLP TIMIFPISHV VTSNNHCLNT MMKCIALGAV 120 EFLSKPLSED KLRNIWQHVV HKAFSSGTSI LCESLKPVKE SLVTMLQLPT DNEQHESRVS 180 IDIEKVSKFT DNDDVLSPGN DKYPAPSTPQ LMHGTRLLDD GDCQEQTNCS TEKESGEHDG 240 ESKSVETTCG NLNAETESTP QERKSDMTLP REEVNLVDDS KVESIASQHT QKRKVLSNPD 300 KNTKSANKVG ILSDSCEIKP SRKKMKVDWT PELHKKFVKA VEQLSIDQAI PSRILELMKV 360 EGLTRHNVAS HLQKYRMHRR QIFPKEEDRK WLNQRERSYC VQRPIMAFPP YHSNRTHPMA 420 PIYPMWGQPS TQTAGMHIWS TPGYPLWQPT AEHWHWKPFP GMHADAWGCP VLPVAPPQAP 480 FPCSKNMPAL LNADATGHTF TMPQSSLEHY PAEEVVDKVV KEAVSKPWLP LPLGLKPPST 540 DSVLAELSRQ GICSIPPRSS KG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-16 | 329 | 378 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g11840.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510108.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_022639109.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-141 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A1S3UVI7 | 0.0 | A0A1S3UVI7_VIGRR; two-component response regulator-like APRR2 isoform X1 | ||||
STRING | XP_007155750.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-137 | ARR-B family protein |
Publications ? help Back to Top | |||
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