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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g11540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 276aa MW: 30811.9 Da PI: 8.4995 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.7e-19 | 133 | 187 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Vradi07g11540.1 133 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTK 187 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.3 | 5.6e-40 | 133 | 222 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Vradi07g11540.1 133 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 222 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.34E-18 | 123 | 190 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 131 | 193 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-17 | 133 | 187 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-16 | 133 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.10E-16 | 133 | 190 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.8E-25 | 189 | 232 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.2E-10 | 189 | 223 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MMGLHQDPTD SGLQLILGLA LTSTPQDIIT PSPPSILHHH HLTTHRPNSY SSKSDPEPSL 60 TLALSRQTYP HPRNKLSSED PLEHTSPHSA ISSFSSGRVK RERDLSCEEV DATETERVSS 120 RASDEEEDGT TARKKLRLTK EQSALLEESF KQHSTLNPKQ KQALAKQLSL RPRQVEVWFQ 180 NRRARTKLKQ TEVDCEFLKK CCETLTDENR RLQKELQELK ALKLAQPLYM PMSAATLTMC 240 PSCERLGGGA STKSPFSMAP KPHFFNPFAN PSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 189 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g11540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098295 | 1e-131 | BT098295.1 Soybean clone JCVI-FLGm-23E21 unknown mRNA. | |||
GenBank | KT031173 | 1e-131 | KT031173.1 Glycine max clone HN_CCL_18 homeodomain/HOMEOBOX transcription factor (Glyma17g16930.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507042.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 2e-92 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A1S3UM15 | 0.0 | A0A1S3UM15_VIGRR; homeobox-leucine zipper protein HAT22 | ||||
STRING | XP_007155789.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-81 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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