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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g11480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 642aa MW: 71341.7 Da PI: 6.5529 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.7 | 1.6e-14 | 401 | 450 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Vradi07g11480.1 401 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 450 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.772 | 289 | 364 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-8 | 315 | 366 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.26E-11 | 315 | 364 | No hit | No description |
SMART | SM00380 | 2.9E-9 | 316 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-7 | 334 | 365 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-24 | 399 | 460 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-17 | 399 | 459 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-33 | 400 | 464 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-18 | 400 | 458 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 400 | 458 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-9 | 401 | 450 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MKSMENDDSV DLNNQNNWLG FSLSPQMNVG VASHPQPSSA ADVVPTSFYH TAPLNNYGFY 60 YGLEAENVGL YSALPIMPLK SDGSLYGMEA LSRSQTQAMA TTSTPKLENF LGGEAMGTPH 120 YECNVTETIP LSLDSVFYNQ SSRRDPNNQT FQNHVQHITT PQQHQQDLQA QHLSYYSTLR 180 NHDMMLEGSK QSQTSDSNLQ VPNMGDDGVP ASGLKSWGVR NFQTSHAQDS KLIVPVEENG 240 GESGSIGSMA YGDLQSLSLS MSPSSQSSCV TSSHRTSPAV IDSVAMDTKK RGPEKVDQKQ 300 IIHRKSIDTF GQRTSQYRGV TSCKKEGQSR KGRQGGYDME EKAARAYDLA ALKYWGPSTH 360 INFPLENYQN ELEEMKNMTR QEYVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV 420 AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIT RYDVEKIMAS SNLLSSELAR 480 RNRETDSGTQ YIDHNHKSSA YDDTEEAILM QKSCENQNDQ WKMTPYQSSQ QLDQNPPRTE 540 SDRTNQSFSV ALDNMFHQEV EESRKVRTHV SNPSSLATSL NSSREGSPDR TSLPMLSGMP 600 STASKLLSTN PNNVNSWDPS PHLRPALSLP QMPVFAAWTD A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g11480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022639098.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-139 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A4D6KU15 | 0.0 | A0A4D6KU15_VIGUN; AP2-like factor | ||||
STRING | XP_007155799.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-109 | AP2 family protein |