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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g10230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 352aa MW: 39443.6 Da PI: 7.1433 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 219 | 274 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+e+m+v gLt+++vkSHLQkYRl+ Vradi07g10230.1 219 KQRRCWSPELHRRFVDALQQLGGPQVATPKQIREVMQVVGLTNDEVKSHLQKYRLH 274 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.229 | 216 | 276 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 217 | 277 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-17 | 217 | 277 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-26 | 219 | 274 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.2E-8 | 221 | 272 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MELSLDLSLA FVPGRTVRQI LGQVAQNEDG SQRMATLEDF LQKLEDEKRK IESFKRELPL 60 CMLLVNDAIT KLKEEINGGV RMQEEPVVLK TNSEGSETLN MGKERSNMKN WMNSVRLWNV 120 ESKPRTEEDD RCVPDNPNQP QNETNKSRGA ALNGNNCVLK TVMSEEKGVS QVPSVGLMRP 180 VFELNDRKAE SSNEHGSSLI ATRSLEIKGQ AQPQQNPRKQ RRCWSPELHR RFVDALQQLG 240 GPQVATPKQI REVMQVVGLT NDEVKSHLQK YRLHFRRPQV CSVEVANGGL CLMVKDNNKS 300 KGNLLSQSGS PQGPLFLGGS GRNSMDTEED EQSDCHNWKG ALHHQPEAEL L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g10230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-158 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507245.1 | 0.0 | transcription factor HHO5 isoform X1 | ||||
TrEMBL | A0A1S3UMM4 | 0.0 | A0A1S3UMM4_VIGRR; transcription factor HHO5 isoform X1 | ||||
STRING | XP_007155959.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 6e-57 | G2-like family protein |