PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g09200.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 970aa    MW: 110114 Da    PI: 5.5372
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g09200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.86.8e-171062456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     R+++ +e + +Lee F+++++p++++r+++ ++lgL+ +qVk+WFqN++++ +
  Vradi07g09200.1 10 RHRHDPETIARLEEIFKECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLR 62
                     89999********************************************9876 PP
2START132.64.5e-422494712206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      +a+ a++el+k+ + +ep+W++s       +++d + ++f++s++      ++e +++s+vv m  ++lve +l++  +W   ++    kaet+
  Vradi07g09200.1 249 IANNAMEELMKLLSMNEPFWFRSLvderFVLQRDCYQRIFQRSNSlngphARVESSKDSRVVKMSGTELVEMFLNSD-KWVDLFPtivkKAETI 341
                      6889********************98776789999999999999999******************************.88888888888***** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      +v++sg      galqlm+ae+  lsplvp R+f f+Ry++q +ag+w+i dvS+ds +++   s+v  +++lpSg+li++ ++g ++v wveh
  Vradi07g09200.1 342 KVLESGslgnrnGALQLMNAEMHILSPLVPtREFRFLRYCKQIEAGVWTIGDVSIDSSTHKI--SNVSSSRRLPSGLLIQEIADGLCRVSWVEH 433
                      ************************************************************96..56666679********************** PP

                      EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      v++++++  h l+r l+    a ga +w  +l+r ce+
  Vradi07g09200.1 434 VEVDDKIQiHHLFRDLICGNNAYGAERWILALERMCER 471
                      ******988***************************96 PP
3START85.61.1e-277909654165
                      HHHHHHHHHHHHHC-TT-EEEE.............EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
            START   4 eeaaqelvkkalaeepgWvkss.............esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                      +  a+el k+ + +ep+W k++              ++++ +                ++e +r+s++v m++++lv ++ld++ +W+  +   
  Vradi07g09200.1 790 NNGAEELKKLCTRNEPFWLKDVnegkfifqsdkyqRILERRY---------CltgpnARVECSRDSRLVNMNVEQLVDIFLDSG-KWSDLFSti 873
                      5567888999999*********88875554444444444444.........2555556**************************.666666666 PP

                      ..EEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  78 ..kaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                        kaetl+ +s +  gal lm+ae+q ls+ vp  +f+f+R++rq ++g wvi dvS++s ++++ ss++    ++pSg+li++  +g + vt
  Vradi07g09200.1 874 vkKAETLKLLSRDrnGALLLMSAEMQILSHWVPtPEFLFLRCCRQFEDGAWVIGDVSINSSKYKN-SSGGGFLWRRPSGCLIRQINQGFCWVT 965
                      66**************************************************************9.89999999**************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-14366IPR009057Homeodomain-like
PROSITE profilePS5007114.754464IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-14567IPR009057Homeodomain-like
SMARTSM003891.1E-11668IPR001356Homeobox domain
PfamPF000462.2E-141062IPR001356Homeobox domain
CDDcd000863.80E-121065No hitNo description
PROSITE profilePS5084839.599239474IPR002913START domain
SuperFamilySSF559611.85E-24243472No hitNo description
CDDcd088752.53E-91245470No hitNo description
SMARTSM002344.0E-30248471IPR002913START domain
PfamPF018525.9E-35249471IPR002913START domain
SuperFamilySSF559611.99E-10527695No hitNo description
PROSITE profilePS5084823.746778969IPR002913START domain
SuperFamilySSF559612.4E-17783968No hitNo description
SMARTSM002340.075787968IPR002913START domain
PfamPF018523.1E-22789965IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MSDSDRDHCR HRHDPETIAR LEEIFKECSH PDETRRRQIG EELGLDAKQV KFWFQNKKTQ  60
LRTKSERLDI NALRLENERI QSENRIMSEA LQTIACAPCG GRSMRQEERE LYLQILKHVS  120
SPATVDPFPS LDDPLLISCL EYNIPALVTA LDQNILTLAS TRNHNNINLH VVEKQSQGLN  180
PCLNVPSVTP NLDQDNPHPG QDISSILQDH TPSLDLDLDA ILQIWNSDVV SQPKTSENKD  240
TENERMLKIA NNAMEELMKL LSMNEPFWFR SLVDERFVLQ RDCYQRIFQR SNSLNGPHAR  300
VESSKDSRVV KMSGTELVEM FLNSDKWVDL FPTIVKKAET IKVLESGSLG NRNGALQLMN  360
AEMHILSPLV PTREFRFLRY CKQIEAGVWT IGDVSIDSST HKISNVSSSR RLPSGLLIQE  420
IADGLCRVSW VEHVEVDDKI QIHHLFRDLI CGNNAYGAER WILALERMCE RIACASAETI  480
PSCDVGGVIR SLDSRRNILR LTRRMVKSFC DSLCMKDNTS FPHLTRMNNG AIRVAIRVNM  540
NELGEPKGMV LSAATSFWLP ISPQDIFDYL IDDKKRAKWD VLCSGNAGHE IQRMTTGSNP  600
GNCVSIMRPF IPKENNIVIL QESYVDALGC MMLYAPFDMK ALNYVMNGED TSLFPILPSG  660
FTISRDAKPD VPAGQSGGSL VTLMFQILAS SPSRMSMVDI EFVNVHSTFR NVLECRELPN  720
QPDTGRECPA EASPEIPPTD VENEIEDNKL IDLDQELDAV IEILKNDTLF KCIANESRDL  780
ESEVMRQIAN NGAEELKKLC TRNEPFWLKD VNEGKFIFQS DKYQRILERR YCLTGPNARV  840
ECSRDSRLVN MNVEQLVDIF LDSGKWSDLF STIVKKAETL KLLSRDRNGA LLLMSAEMQI  900
LSHWVPTPEF LFLRCCRQFE DGAWVIGDVS INSSKYKNSS GGGFLWRRPS GCLIRQINQG  960
FCWVTSYFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g09200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143783.10.0hypothetical protein PHAVU_007G101200g
RefseqXP_007158859.10.0hypothetical protein PHAVU_002G187900g, partial
TrEMBLA0A0L9T5A40.0A0A0L9T5A4_PHAAN; Uncharacterized protein
STRINGXP_007143783.10.0(Phaseolus vulgaris)
STRINGXP_007158859.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1737556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.11e-141homeodomain GLABROUS 9