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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g08280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 603aa MW: 67801 Da PI: 4.7355 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 63.9 | 3e-20 | 207 | 256 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQ Vradi07g08280.1 207 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMSVPWLTRENVASHLQ 256 68*******************.9**************************** PP | |||||||
2 | Response_reg | 82 | 1.9e-27 | 27 | 135 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl+vdD+p+ +++l+++l+k y ev+++ ++eal++l+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Vradi07g08280.1 27 VLVVDDDPTWLRILEKMLKKCLY-EVTTCCLATEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGVQH 118 89*********************.***************888889**********************6644.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ Vradi07g08280.1 119 GACDYLLKPIRMKELRN 135 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.13E-35 | 24 | 153 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.2E-44 | 24 | 159 | No hit | No description |
SMART | SM00448 | 5.0E-32 | 25 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.886 | 26 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-24 | 27 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.16E-30 | 28 | 141 | No hit | No description |
SuperFamily | SSF46689 | 2.87E-13 | 205 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-22 | 205 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-19 | 207 | 260 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 603 aa Download sequence Send to blast |
MTLLSNSMDN GCFSSPRHEA FPAGLRVLVV DDDPTWLRIL EKMLKKCLYE VTTCCLATEA 60 LKKLRERKDA YDIVISDVNM PDMDGFKLLE QVGLEMDLPV IMMSVDGETS RVMKGVQHGA 120 CDYLLKPIRM KELRNIWQHV FRKRMHEARD FESHEGFEAL HLLMNGSEQS DDGNIFAVEE 180 ITSIKKRKDA DSKHDDKEFG DHSPTKKARV VWSVDLHQKF VKAVNQIGFD KVGPKKILDL 240 MSVPWLTREN VASHLQILFS GGENNEEWSY FDKTSMFGSE KYRLYLSRLQ KENDQKSSSS 300 GIKHSDSPSK DPGSFSFLNT ASNKQQSDVV IDSFSPSDGS LLQMDAPSHE GDLKRILSEP 360 TTEKRRASPK SSQMSLNQPF SSVESSEASH AIFDCTIQTQ YSWGEFPKGP LKEEQKTTVQ 420 LEDSFSQLPL HGTRHHIQVD QSQSIASINS NPSITEEEVA PSLDTKPLYA GYKSDYVSPV 480 SSMGTAVDTF PNQSKSLILN DQSPEPIFTS NLGLKTDGFD VDCISDLDFY QRSLLLCGDA 540 ASAPLEEDLN FFLLQTEWYN MNFGQQNIDI SECYDPRLVA EAPGYFYDSA DYSSVDQSLF 600 IA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-14 | 206 | 256 | 4 | 54 | ARR10-B |
3t6k_A | 4e-13 | 27 | 133 | 7 | 114 | Response regulator receiver |
3t6k_B | 4e-13 | 27 | 133 | 7 | 114 | Response regulator receiver |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g08280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506928.1 | 0.0 | two-component response regulator ARR11 | ||||
TrEMBL | A0A1S3ULI8 | 0.0 | A0A1S3ULI8_VIGRR; two-component response regulator ARR11 | ||||
STRING | XP_007158728.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-109 | response regulator 11 |