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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g07790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 312aa MW: 34366.4 Da PI: 7.1967 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.7 | 9.2e-09 | 3 | 40 | 24 | 57 |
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +p ++e++++ +l ++ +++V++WFqNr+ + k+ Vradi07g07790.1 3 NPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKN 40 7999*******************************995 PP | |||||||
2 | Wus_type_Homeobox | 66.2 | 6.2e-22 | 1 | 41 | 24 | 64 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k Vradi07g07790.1 1 MVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKNK 41 78*************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 3.4E-6 | 3 | 39 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.29E-5 | 3 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVNPPRDEIR KIRVQLQEYG QVGDANVFYW FQNRKSRSKN KLRHIQNSKN HNTETQANLL 60 SLSQIIPPST SSSSSDKSSS KELVHPNAIS FGFSNVNDAL PNSPTASVNQ TYLQSHNYNN 120 TALLPPVIES FSFPLHNNGQ GVIVNDTITT HGFSIPQFSN NIMQSQPQCE PKVGHSSSLF 180 LNEIMSHGTF SKKDQDQEKA LKSMHRQQLS SPPTSSSTTT VAHEISTLPC PITQLQGVGG 240 EVTADREKCI VFINDVAFEV MMGPFNVRQA FGDEAVLIHS SGPVPTDDWG ITLHPLQHGA 300 YYYLFSAGLK V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g07790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506392.1 | 0.0 | WUSCHEL-related homeobox 9-like | ||||
Refseq | XP_022640191.1 | 0.0 | WUSCHEL-related homeobox 9-like | ||||
TrEMBL | A0A1S3UK30 | 0.0 | A0A1S3UK30_VIGRR; WUSCHEL-related homeobox 9-like | ||||
STRING | XP_007153888.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3824 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-42 | homeobox-3 |