PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g07530.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 803aa MW: 92914.5 Da PI: 7.0466

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g07530.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.3	9.5e-22	130	216	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+ YA GFs+rk+ +ks+ ng +++r+++C ++g+r +++ + r+ ++etrtgC a++++ ++ +gk++vt++e+eHnHe++ Vradi07g07530.1 130 CYSMYAVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGT--YLRKFQQETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFV 216 7*************************************998877..99999********************************97 PP
2	FAR1	92.6	4.8e-29	263	351	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ +++++r+ tr+gC a+++++++ dg ++vt++e++HnHel+ Vradi07g07530.1 263 EFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKQD-MNTKKPRKDTRIGCLAQMVISRQPDGMYYVTHFEEKHNHELV 351 6*****************************************999.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-20	130	216	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.7E-26	263	351	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-23	467	560	IPR018289	MULE transposase domain
Pfam	PF04434	7.6E-7	736	782	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.509	747	783	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.1E-6	758	785	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence Send to blast
MEGTEPDIER HPLENSEKEC PISAVVVLGQ ESQTRNPCGS SVEDTIKVIG TENECTGPNV 60 CPVDHSHIKI NDECQTSTIF HDDKFHIDNV SSGELCENSC ASTDVKNEDE IYVAPKIGME 120 FESEDSAYKC YSMYAVLKGF SIRKDFVNKS RINGAVVSRR YTCHRQGYRP NKNGTYLRKF 180 QQETRTGCLA HMTIARQPNG KFQVTHFETE HNHEFVKPCT AHMLPSQKKL SFAQAIEANL 240 TVSGLDETPK LGMGFDSDEH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV ASRRFTCFRE 300 GFRQKDKQDM NTKKPRKDTR IGCLAQMVIS RQPDGMYYVT HFEEKHNHEL VAACRVHMLR 360 SQQKGLTATQ IEKNIVDGSN MLPTSTSETN CKARLDYDPV NHEYKLPFKC SSKMKGEIEK 420 IKLHFQIKQR KNPSFFYAFQ LDADDQITNI FWADTKMIID YTDFGDVVCF DSSYKYYKDS 480 WPFVPFLGIN NHQQMTIFGV ALLQNESVES LKWLFIVFLE AMSGRKPKTI LTDLDVVTAE 540 AINVILPQTN HRVCVWHVYQ DALKHLSHVS AGSDSFVNDL RSCLFHHEEE DYFVNEWNAL 600 LDKYNLWENE WLQQIFGSRH RWAIAYGRQY FCADIESVLL RQNLTGNLKR YLKHDSDILP 660 LFKYLVKVVT DWHYKELEAN YDMNQRMPPL LGDIITLKHA RAPYTPKIFE LFQKEYEACL 720 NLVIKHCTEN RSFYNYKVSV YEQAREYSVT FDSSDETISC SCMKFEYVGI LCCHALKVLD 780 YVNIRIVPSR YILKRWTKDA RV*

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence Send to blast

MEGTEPDIER HPLENSEKEC PISAVVVLGQ ESQTRNPCGS SVEDTIKVIG TENECTGPNV  60
CPVDHSHIKI NDECQTSTIF HDDKFHIDNV SSGELCENSC ASTDVKNEDE IYVAPKIGME  120
FESEDSAYKC YSMYAVLKGF SIRKDFVNKS RINGAVVSRR YTCHRQGYRP NKNGTYLRKF  180
QQETRTGCLA HMTIARQPNG KFQVTHFETE HNHEFVKPCT AHMLPSQKKL SFAQAIEANL  240
TVSGLDETPK LGMGFDSDEH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV ASRRFTCFRE  300
GFRQKDKQDM NTKKPRKDTR IGCLAQMVIS RQPDGMYYVT HFEEKHNHEL VAACRVHMLR  360
SQQKGLTATQ IEKNIVDGSN MLPTSTSETN CKARLDYDPV NHEYKLPFKC SSKMKGEIEK  420
IKLHFQIKQR KNPSFFYAFQ LDADDQITNI FWADTKMIID YTDFGDVVCF DSSYKYYKDS  480
WPFVPFLGIN NHQQMTIFGV ALLQNESVES LKWLFIVFLE AMSGRKPKTI LTDLDVVTAE  540
AINVILPQTN HRVCVWHVYQ DALKHLSHVS AGSDSFVNDL RSCLFHHEEE DYFVNEWNAL  600
LDKYNLWENE WLQQIFGSRH RWAIAYGRQY FCADIESVLL RQNLTGNLKR YLKHDSDILP  660
LFKYLVKVVT DWHYKELEAN YDMNQRMPPL LGDIITLKHA RAPYTPKIFE LFQKEYEACL  720
NLVIKHCTEN RSFYNYKVSV YEQAREYSVT FDSSDETISC SCMKFEYVGI LCCHALKVLD  780
YVNIRIVPSR YILKRWTKDA RV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g07530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014505851.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_022638920.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3UIJ5	0.0	A0A1S3UIJ5_VIGRR; protein FAR1-RELATED SEQUENCE 5
STRING	XP_007151573.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5