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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g05650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 383aa MW: 43159.1 Da PI: 9.4793 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.6 | 2.7e-07 | 70 | 119 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 +++++gr++A+++d ++n k+k + g + +e Aa+a++ a++k++g Vradi07g05650.1 70 RHRWTGRFEAHLWDkGTWNPtqKKKGKQ-GAYNDEEAAARAYDLAALKYWG 119 899***********87777785557777.666666**************98 PP | |||||||
2 | AP2 | 52.4 | 1.3e-16 | 162 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Vradi07g05650.1 162 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 213 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.488 | 57 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-11 | 69 | 129 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-11 | 70 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-9 | 70 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-18 | 162 | 223 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.39E-25 | 162 | 223 | No hit | No description |
Pfam | PF00847 | 4.7E-12 | 162 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 163 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-26 | 163 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 163 | 222 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006110 | Biological Process | regulation of glycolytic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0019432 | Biological Process | triglyceride biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MELAPVKCEL SPRNHRLLVI DGSEVIAAKC VKRRRRCSSM SVLGGNEQQG EKLEEHKQLG 60 TATTVKRSSR HRWTGRFEAH LWDKGTWNPT QKKKGKQGAY NDEEAAARAY DLAALKYWGT 120 STFTNFPVSD YEKEIEIMKT VTKEEYLASL RRRSSGFSRG VSKYRGVARH HHNGRWEARI 180 GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSTYIRWLR PGTHPIASHD 240 PQPLATSNSM QTRGNIEVSN SNMHSFSSAE LDSTKKQDFS KYMNPLSPCN KPSSPTALGL 300 LLKSTVFREL MQRNLNSSGE EYPQEGNDGN GGTYYSENTS NSYFSSSDIN RLPNLESPED 360 TSLPMYHGTV QSLWNTSFNM SN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | PTQKKKGKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g05650.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093168 | 1e-177 | BT093168.1 Soybean clone JCVI-FLGm-24O15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506312.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1S3UJU8 | 0.0 | A0A1S3UJU8_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | XP_007153839.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2198 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-62 | AP2 family protein |