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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g05520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 361aa MW: 41423.4 Da PI: 5.0679 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.4e-19 | 123 | 176 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e++ +LAk+lg++ rqV +WFqNrRa+ k Vradi07g05520.1 123 KKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 176 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.3 | 1.6e-41 | 123 | 213 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl++eqv++LE++Fe+e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlEkdy +Lk++yd lk++ ++L +e+++L+ee+ Vradi07g05520.1 123 KKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKARYDILKRDYDNLVQENDKLKEEVY 213 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.47E-19 | 112 | 180 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 118 | 178 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-17 | 120 | 182 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.88E-16 | 121 | 179 | No hit | No description |
Pfam | PF00046 | 3.2E-16 | 123 | 176 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-20 | 125 | 185 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 149 | 158 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 153 | 176 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 158 | 174 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.9E-15 | 178 | 215 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEDKARSNLR CEGGDASDAG ATMTSRATAA LRVPVRRLRR AMAGEKLNGG SSMTLLLQKE 60 RLPCSPEHIQ TFWVQNSQPS FQGSKSLVNV VNVRDRRPFF RGVEREENDD DEDFEVFPHQ 120 PGKKRRLTSE QVQFLESNFE MENKLEPERK VQLAKELGMQ PRQVAIWFQN RRARFKTKQL 180 EKDYGMLKAR YDILKRDYDN LVQENDKLKE EVYSLMKVIP REKEKQNLDD TSCDAVNSGH 240 KEQKDLIING GSKNESKVAL PVMVISKQKD ANSAKSDVLD SESPHFIDGN QSSLFEPADS 300 SHALEPDHSD FSQDEEDILS QNMPLLPKFE VEYVCYDEPP ENPFTFRFPV EDQTFCFWSC 360 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 178 | RRARFKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g05520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507974.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Refseq | XP_014507975.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Refseq | XP_022638849.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S3UPQ3 | 0.0 | A0A1S3UPQ3_VIGRR; homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_007153855.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-46 | homeobox 1 |