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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g04500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 314aa MW: 35384.3 Da PI: 7.0712 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68 | 1.2e-21 | 75 | 135 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+ ql +Leel+++ +++psae+++++A++l +++ ++V++WFqN++a+e++ Vradi07g04500.1 75 STRWSPTPVQLLVLEELYRQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 135 68*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.3 | 2.6e-36 | 74 | 137 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Vradi07g04500.1 74 QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 137 789***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.08E-13 | 69 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.341 | 71 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-7 | 73 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 76 | 135 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.6E-19 | 76 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.41E-6 | 76 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSDSYASTFH SPTPNVTHAT SKLTTLCSIA QPYCICTHCN HILSFNHHVG KPDSISNATE 60 EGTNNTGSHV QSQQSTRWSP TPVQLLVLEE LYRQGTKTPS AEQIQQIASQ LRQFGKIEGK 120 NVFYWFQNHK ARERQKRRRR EMEENNAASS SEGLKETGCG VKETKKWAST SNCSRHAEES 180 AALDIAEKGS NGWTQFEERG IQVLRRNISE RRLQLQDNME IPCFPPTTMA AALATSHRTL 240 TTQLLIPQSY NRETLNYYDG ENADPRTLDL FPHKNDDQDG ICLAERKSMF CASASMDTDI 300 TSSQFFEFLP LRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g04500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506266.1 | 0.0 | WUSCHEL-related homeobox 6 | ||||
TrEMBL | A0A1S3UJQ8 | 0.0 | A0A1S3UJQ8_VIGRR; WUSCHEL-related homeobox 6 | ||||
STRING | XP_007157754.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15154 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 5e-29 | WUSCHEL related homeobox 1 |