PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g04360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 167aa    MW: 19013.8 Da    PI: 9.4574
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g04360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-191872256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     rk+ ++tkeq + Lee F++n++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Vradi07g04360.1 18 RKKLRLTKEQSRLLEESFRQNHTLNPKQKDCLAMQLKLRPRQVEVWFQNRRARSK 72
                     78889************************************************98 PP
2HD-ZIP_I/II118.73.2e-3818106189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl+keq++lLEesF+++++L+p++K  la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Vradi07g04360.1  18 RKKLRLTKEQSRLLEESFRQNHTLNPKQKDCLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 106
                      69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-18372IPR009057Homeodomain-like
SuperFamilySSF466894.14E-19975IPR009057Homeodomain-like
PROSITE profilePS5007117.0541474IPR001356Homeobox domain
SMARTSM003895.3E-161678IPR001356Homeobox domain
CDDcd000861.32E-141775No hitNo description
PfamPF000461.0E-161872IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PfamPF021834.4E-1074108IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-2274117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MASNMEDEEE SSNGDPPRKK LRLTKEQSRL LEESFRQNHT LNPKQKDCLA MQLKLRPRQV  60
EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL TEQNRRLQRE VEELRAMKVG PPTVISPHSC  120
EPLPASTLTM CPRCERVTTT ADKLPSAAAT LSAKVPPHSP QPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g04360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-150AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508300.11e-119homeobox-leucine zipper protein HOX3
SwissprotQ0JKX14e-74HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH384e-74HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1S3UQK71e-118A0A1S3UQK7_VIGRR; homeobox-leucine zipper protein HOX3
STRINGXP_007157736.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-70homeobox-leucine zipper protein 17