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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g03280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 400aa MW: 44200.2 Da PI: 8.4787 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 1.9e-32 | 257 | 312 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Vradi07g03280.1 257 KQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 312 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.73E-18 | 254 | 315 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.461 | 254 | 314 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 255 | 315 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-27 | 257 | 312 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-8 | 259 | 310 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MGSVLPELSL DLRPSFVPKT ITDFLRHLSS ATDRLATLHD FLARLEDELR KIHAFKRELP 60 LSMLLLNDAI SLLKTESQKC GPPDSSPVLE EFIPLKKEYD RNEGNNSNDN DMDNECRDKK 120 NWLSSVQLWN NSTTASDRKH QQLHTLENKK IEEGQYVGED PFQSCSNING GRRAFLPFSR 180 YSSSSSSVPV ATAGLAAATK EEKEESVMNR LSLQNPSVKE GCGSRGSRSS SNRAVSSSPP 240 TVHPSLRASS LQQTARKQRR CWSPELHRRF VNALQKLGGS QAATPKQIRE LMQVDGLTND 300 EVKSHLQKYR LHTRRVPAGS GNQPVVVLGG LWMSQDQYND SSKVSSSGSG SPQSPLHLTT 360 GSRGGTSPTE GDSMEDDEDA RSESYSWKSH MHKPGKVDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-13 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g03280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510738.1 | 0.0 | transcription factor HHO6 | ||||
TrEMBL | A0A1S3UXB9 | 0.0 | A0A1S3UXB9_VIGRR; transcription factor HHO6 | ||||
STRING | XP_007156531.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 7e-53 | G2-like family protein |