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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g01760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 228aa MW: 26206.8 Da PI: 9.4219 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.5 | 1.7e-28 | 32 | 118 | 1 | 78 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rWt+qe+l+Li+++r+ e+++rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e + ++es s Vradi07g01760.1 32 RWTRQEILVLIQGKRDAENKFRRGRttglplgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWEPQIKEESDSF 118 8**********************97778888888********************************************997776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.562 | 32 | 98 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 32 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.9E-13 | 32 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MTNHQLNGLN SKTSDTLGRV PLGQFIPPRL PRWTRQEILV LIQGKRDAEN KFRRGRTTGL 60 PLGSGQVEPK WASVSSYCRK HGVNRGPVQC RKRWSNLAGD YKKIKEWEPQ IKEESDSFWV 120 APKVRRWLSL FHRLLQMTVT VCKDMHMDMD TKRGYVSHGK HESGDSLIRR CSCCNESLSS 180 QLYPPYLQLK PSWGDENYMS KGPLIVEEAI DDEKSDKDLD FERNNDG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g01760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-136 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506191.1 | 7e-87 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1S3UJI4 | 2e-85 | A0A1S3UJI4_VIGRR; trihelix transcription factor ASR3-like | ||||
STRING | XP_007142589.1 | 2e-60 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 5e-55 | Trihelix family protein |