PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g01090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 612aa    MW: 65626.2 Da    PI: 6.9753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g01090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.7e-06566588426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C +f  +  C+ G++C+F H+
  Vradi07g01090.1 566 KPCIYFKSSKGCRNGSNCPFQHD 588
                      69********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.718563590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4566589IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4566588IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MAAFVQPRPR HCSHCHRALL PGILLMCYTA SASLHFLSIS VVALATTLLI LLMSSSSWRS  60
KWHMMCFGAS ALFISSKTGE EEGQHSQDHL QVKTSMLNSN SAINDHTDLP PGFESSHFLK  120
QTRVDLSCIS QIKWECAPPF ILNPEWRVVA GEESREKENQ KARENRSLIL LSWDWVFSPS  180
VSLDVEEEDY DDDDTPLIPI IPIEEEEPVD ILPEVAVAGN PFPNVQPNNP LQYVSAETSI  240
RSPSNAFYTD SSDPCTGIPL GGGVSFGMEA DLAASVVATI MRSSEQGSPI DMDLLVKIFN  300
DPKMLDKLIN EHRTAATTTS ASTSTVDTTP GVKPDTPVLL SISDVKASGA TPTSAVGSLP  360
FGLKTTYPSV SVLSPTPDKS STRSVPAVPS VSVFSPAHDN PVTASVPLSR PLSGKPGTPS  420
VSLLTNTPAS HIPRSVSKQI HHVSGGISPA LNTQPQQDTA LASGPKRAAA MAGELSTGPV  480
PSLTRNLHAV VNPVQSPAST LPYKLSTGSS AFAVKDANYY KNLIRQHGAD KQDMQDSHIG  540
IRHSYLHDLK PVPNFKQGEV KHKIQKPCIY FKSSKGCRNG SNCPFQHDVS AQWGAGNILG  600
AQSAKRLKSG P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g01090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510729.10.0zinc finger CCCH domain-containing protein 6 isoform X1
TrEMBLA0A1S3UXW30.0A0A1S3UXW3_VIGRR; zinc finger CCCH domain-containing protein 6 isoform X1
STRINGXP_007156125.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF868379