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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g01090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 612aa MW: 65626.2 Da PI: 6.9753 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.3 | 8.7e-06 | 566 | 588 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C+ G++C+F H+ Vradi07g01090.1 566 KPCIYFKSSKGCRNGSNCPFQHD 588 69********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.718 | 563 | 590 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 566 | 589 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 566 | 588 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MAAFVQPRPR HCSHCHRALL PGILLMCYTA SASLHFLSIS VVALATTLLI LLMSSSSWRS 60 KWHMMCFGAS ALFISSKTGE EEGQHSQDHL QVKTSMLNSN SAINDHTDLP PGFESSHFLK 120 QTRVDLSCIS QIKWECAPPF ILNPEWRVVA GEESREKENQ KARENRSLIL LSWDWVFSPS 180 VSLDVEEEDY DDDDTPLIPI IPIEEEEPVD ILPEVAVAGN PFPNVQPNNP LQYVSAETSI 240 RSPSNAFYTD SSDPCTGIPL GGGVSFGMEA DLAASVVATI MRSSEQGSPI DMDLLVKIFN 300 DPKMLDKLIN EHRTAATTTS ASTSTVDTTP GVKPDTPVLL SISDVKASGA TPTSAVGSLP 360 FGLKTTYPSV SVLSPTPDKS STRSVPAVPS VSVFSPAHDN PVTASVPLSR PLSGKPGTPS 420 VSLLTNTPAS HIPRSVSKQI HHVSGGISPA LNTQPQQDTA LASGPKRAAA MAGELSTGPV 480 PSLTRNLHAV VNPVQSPAST LPYKLSTGSS AFAVKDANYY KNLIRQHGAD KQDMQDSHIG 540 IRHSYLHDLK PVPNFKQGEV KHKIQKPCIY FKSSKGCRNG SNCPFQHDVS AQWGAGNILG 600 AQSAKRLKSG P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g01090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510729.1 | 0.0 | zinc finger CCCH domain-containing protein 6 isoform X1 | ||||
TrEMBL | A0A1S3UXW3 | 0.0 | A0A1S3UXW3_VIGRR; zinc finger CCCH domain-containing protein 6 isoform X1 | ||||
STRING | XP_007156125.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8683 | 7 | 9 |