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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g00970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 235aa MW: 25853.2 Da PI: 9.5595 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.5 | 8.7e-19 | 152 | 186 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l Vradi07g00970.1 152 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 186 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 9.5E-15 | 145 | 208 | No hit | No description |
PROSITE profile | PS50114 | 11.939 | 146 | 182 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.1E-16 | 146 | 200 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.4E-15 | 150 | 184 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.30E-13 | 151 | 199 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 152 | 177 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-16 | 152 | 186 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MECLEAVLKS SFRKDMALKL SPQAYTEDLN MQNVNSCDDF FVDDLLDFSL LENEEPDQHK 60 HTHHSTSSLA EKPPEPGNAG FTFKTLVPAK PRSKRTRTGV RVWPLRSPSS FTDTSSPRSP 120 LLIFAATSKD HHPEDKRAKK RAASDGGAAR RCSHCGVQKT PQWRTGPLGA KTLCNACGVR 180 YKSGRLLPEY RPACSPTFSS ELHSNHHRKV LEMRQKKEAG PGPDTGSPAS VPGF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g00970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426428.1 | 1e-132 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | O65515 | 6e-50 | GATA7_ARATH; GATA transcription factor 7 | ||||
Swissprot | Q9FH57 | 8e-49 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A0L9TQ00 | 1e-131 | A0A0L9TQ00_PHAAN; GATA transcription factor | ||||
TrEMBL | A0A0S3R417 | 1e-131 | A0A0S3R417_PHAAN; GATA transcription factor | ||||
STRING | XP_007156103.1 | 1e-126 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 7e-51 | GATA transcription factor 5 |
Publications ? help Back to Top | |||
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