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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g00590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ZF-HD | ||||||||
Protein Properties | Length: 309aa MW: 34805.1 Da PI: 8.823 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.4 | 3.5e-33 | 98 | 154 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY+eClkNhAas+Ggh++DGCgEfmp+ geegt++++kCaAC+CHRnFHR+e+e e Vradi07g00590.1 98 TFRYRECLKNHAASMGGHVTDGCGEFMPN-GEEGTPESFKCAACECHRNFHRKEPEGE 154 789*************************8.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 95 | 150 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-30 | 99 | 151 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-30 | 100 | 150 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.751 | 101 | 150 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.79E-19 | 235 | 305 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-29 | 239 | 306 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-26 | 244 | 301 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MDMREQDKVI EMPTTLGYNL SNRNSSSSKL SSPIGERNDQ PPQSQTLIFS DSHHHHPLNP 60 PNPLQLPHPH RPRRDPDPTP ISPPVITTPR TQPHSTPTFR YRECLKNHAA SMGGHVTDGC 120 GEFMPNGEEG TPESFKCAAC ECHRNFHRKE PEGESSQHHV LNYHLTYPNK TNRNIVIHSP 180 QSHLQLPTPH LHGLVATPSG GPVQPAMLGF GGTPAESSSE DLNMFQTDDA GQLLSAQPPL 240 SSSKKRFRTK FSQQQKDKMM EFAEKLGWKI QRQDEQELHQ FCSQVGVKRQ VFKVWMHNSK 300 QAMKKKQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-21 | 243 | 302 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g00590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022638386.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A3Q0F4F9 | 0.0 | A0A3Q0F4F9_VIGRR; zinc-finger homeodomain protein 6 | ||||
STRING | XP_007156052.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 4e-54 | homeobox protein 24 |